A model order selection criterion with applications to cardio-respiratory-renal systems. - Xinshu Xiao; Ying Li; Ramakrishna Mukkamala (IEEE Trans. Biomed. Eng., 2005)

A weighted-principal component regression method for the identification of physiologic systems. - Xinshu Xiao; Ramakrishna Mukkamala; Richard J. Cohen (IEEE Trans. Biomed. Eng., 2006)

Modeling Associated Protein-DNA Pattern Discovery with Unified Scores. - Tak-Ming Chan; Leung-Yau Lo; Ho-Yin Sze-To; Kwong-Sak Leung; Xinshu Xiao; Man Hon Wong 001 (IEEE ACM Trans. Comput. Biol. Bioinform., 2013)

RASER: reads aligner for SNPs and editing sites of RNA. - Jaegyoon Ahn; Xinshu Xiao (Bioinform., 2015)

TAPAS: tool for alternative polyadenylation site analysis. - Ashraful Arefeen; Juntao Liu; Xinshu Xiao; Tao Jiang 001 (Bioinform., 2018)

Novel approaches for bioinformatic analysis of salivary RNA sequencing data for development. - Karolina Elzbieta Kaczor-Urbanowicz; Yong Kim; Feng Li 013; Timur Galeev; Robert R. Kitchen; Mark Gerstein; Kikuye Koyano; Sung-Hee Jeong; Xiaoyan Wang; David Elashoff; So Young Kang; Su Mi Kim; et al. (Bioinform., 2018)

Special issue on RNA processing and regulation. - Xinshu Xiao; Chaolin Zhang (Quant. Biol., 2018)

DeepPASTA: deep neural network based polyadenylation site analysis. - Ashraful Arefeen; Xinshu Xiao; Tao Jiang 001 (Bioinform., 2019)

Statistical inference of differential RNA-editing sites from RNA-sequencing data by hierarchical modeling. - Stephen S. Tran; Qing Zhou; Xinshu Xiao (Bioinform., 2020)

dsRID: in silico identification of dsRNA regions using long-read RNA-seq data. - Ryo Yamamoto; Zhiheng Liu; Mudra Choudhury; Xinshu Xiao (Bioinform., 2023)