Heterogeneous Graph Neural Network-Based Imitation Learning for Gate Sizing Acceleration. - Xinyi Zhou 010; Junjie Ye 002; Chak-Wa Pui; Kun Shao; Guangliang Zhang; Bin Wang 034; Jianye Hao; Guangyong Chen; Pheng-Ann Heng (ICCAD, 2022)

SeaDAG: Semi-autoregressive Diffusion for Conditional Directed Acyclic Graph Generation. - Xinyi Zhou 010; Xing Li 023; Yingzhao Lian; Yiwen Wang; Lei Chen 031; Mingxuan Yuan; Jianye Hao; Guangyong Chen; Pheng-Ann Heng (CoRR, 2024)

Circuit Synthesis based on Hierarchical Conditional Diffusion. - Xinyi Zhou 010; Xing Li 023; Yingzhao Lian; Yiwen Wang; Lei Chen 031; Mingxuan Yuan; Jianye Hao; Guangyong Chen; Pheng-Ann Heng (ACM Great Lakes Symposium on VLSI, 2025)

Protein Inverse Folding From Structure Feedback. - Junde Xu; Zijun Gao; Xinyi Zhou 010; Jie Hu; Xingyi Cheng; Le Song; Guangyong Chen; Pheng-Ann Heng; Jiezhong Qiu (CoRR, 2025)

PLAME: Leveraging Pretrained Language Models to Generate Enhanced Protein Multiple Sequence Alignments. - Hanqun Cao; Xinyi Zhou 010; Zijun Gao; Chenyu Wang; Xin Gao 026; Zhi Zhang; Chunbin Gu; Ge Liu; Pheng-Ann Heng (CoRR, 2025)