Extracting Biomedical Event Using Feature Selection and Word Representation. - Xinyu He 001; Lishuang Li; Jieqiong Zheng; Meiyue Qin (BioNLP (Shared Task), 2016)

Parallel gene selection and dynamic ensemble pruning based on Affinity Propagation. - Jun Meng; Jing Zhang; Yushi Luan; Xinyu He 001; Li-Shuang Li; Yuan-Feng Zhu (Comput. Biol. Medicine, 2017)

Biomedical Event Trigger Detection Based on BiLSTM Integrating Attention Mechanism and Sentence Vector. - Xinyu He 001; Lishuang Li; Jia Wan; Dingxin Song; Jun Meng; Zhanjie Wang (BIBM, 2018)

An Active Transfer Learning Framework for Protein-Protein Interaction Extraction. - Lishuang Li; Xinyu He 001; Jieqiong Zheng; Degen Huang; Fuji Ren (IEICE Trans. Inf. Syst., 2018)

A Two-Stage Biomedical Event Trigger Detection Method Integrating Feature Selection and Word Embeddings. - Xinyu He 001; Lishuang Li; Yang Liu; Xiaoming Yu; Jun Meng (IEEE ACM Trans. Comput. Biol. Bioinform., 2018)

The Attention Based BLSTM Model Integrating Sentence Embeddings for Biomedical Event Trigger Identification. - Yuxuan Wang; Bo Yu; Hui Shi; Xinyu He 001; Yonggong Ren (ISKE, 2019)

Extracting chemical-protein interactions from biomedical literature via granular attention based recurrent neural networks. - Hongbin Lu; Lishuang Li; Xinyu He 001; Yang Liu; Anqiao Zhou (Comput. Methods Programs Biomed., 2019)

Multi-Level Attention Based BLSTM Neural Network for Biomedical Event Extraction. - Xinyu He 001; Lishuang Li; Xingchen Song; Degen Huang; Fuji Ren (IEICE Trans. Inf. Syst., 2019)

Contextual label sensitive gated network for biomedical event trigger extraction. - Lishuang Li; Mengzuo Huang; Yang Liu; Shuang Qian; Xinyu He 001 (J. Biomed. Informatics, 2019)

A Two-Stage Biomedical Event Trigger Detection Method Based on Hybrid Neural Network and Sentence Embeddings. - Xinyu He 001; Yonggong Ren; Ping Tai; Hui Shi (IEEE Access, 2021)

A computational strategy for metabolic network construction based on the overlapping ratio: Study of patients' metabolic responses to different dialysis patterns. - Xin Huang 015; Zeyu Wang; Benzhe Su; Xinyu He 001; Bing Liu 011; Baolin Kang (Comput. Biol. Chem., 2021)

A Biomedical Trigger Word Identification Method Based on BERT and CRF. - Xinyu He 001; Jiayi Feng; Feiyan Sun; Mengfan Yan; Junjie Qian; Wenqian Dai; Hongyu Wang (WISA, 2022)

A biomedical event extraction method based on fine-grained and attention mechanism. - Xinyu He 001; Ping Tai; Hongbin Lu; Xin Huang 015; Yonggong Ren (BMC Bioinform., 2022)

A network-based dynamic criterion for identifying prediction and early diagnosis biomarkers of complex diseases. - Xin Huang 015; Benzhe Su; Xingyu Wang; Yang Zhou; Xinyu He 001; Bing Liu 011 (J. Bioinform. Comput. Biol., 2022)

Biomedical Event Detection Based on Domain Knowledge Injection and Model Dual Channel Fine-tuning. - Xinyu He 001; Xue Han; Shixin Li; Yonggong Ren (BIBM, 2023)

Multi-task Biomedical Overlapping and Nested Information Extraction Model Based on Unified Framework. - Xinyu He 001; Shixin Li; Guangda Zhao; Xue Han; Qiangjian Zhuang (NLPCC (2), 2023)

Dynamic Network Construction for Identifying Early Warning Signals Based On a Data-Driven Approach: Early Diagnosis Biomarker Discovery for Gastric Cancer. - Xin Huang 015; Benzhe Su; Chenbo Zhu; Xinyu He 001; Xiaohui Lin 002 (IEEE ACM Trans. Comput. Biol. Bioinform., 2023)

General fine-grained event detection based on fusion of multi-information representation and attention mechanism. - Xinyu He 001; Ge Yan; Changfu Si; Yonggong Ren (Int. J. Mach. Learn. Cybern., 2023)

Text classification method based on dependency parsing and hybrid neural network. - Xinyu He 001; Siyu Liu; Ge Yan; Xueyan Zhang (Intell. Data Anal., 2024)

Joint Extraction of Biomedical Events Based on Dynamic Path Planning Strategy and Hybrid Neural Network. - Xinyu He 001; Yujie Tang; Bo Yu; Shixin Li; Yonggong Ren (IEEE ACM Trans. Comput. Biol. Bioinform., 2024)

HAGCN: A relation extraction model based on heterogeneous graph convolutional neural network and graph attention. - Xinyu He 001; Manfei Kan; Yonggong Ren (Intell. Data Anal., 2025)

The more quality information the better: Hierarchical generation of multi-evidence alignment and fusion model for multimodal entity and relation extraction. - Xinyu He 001; Shixin Li; Yuning Zhang; Binhe Li; Sifan Xu; Yuqing Zhou (Inf. Process. Manag., 2025)

Relation extraction method based on pre-trained model and bidirectional semantic union. - Xinyu He 001; Ge Yan; Xue Han; Manfei Kan; Yonggong Ren (Int. J. Mach. Learn. Cybern., 2025)

Enhancing multimodal named entity recognition with multi-granularity knowledge distillation. - Xinyu He 001; Shixin Li; Binhe Li (J. Supercomput., 2025)