Use of Multi-scalar Analysis for Building Lattice Models of PDE's. - Yuanxiang Li; Xiufen Zou; Zhangcan Huang (Parallel Algorithms Appl., 1996)

A dynamical evolutionary algorithm for constrained optimization problems. - Xiufen Zou; Lishan Kang; Yuanxiang Li (IEEE Congress on Evolutionary Computation, 2002)

An efficient dynamical evolutionary algorithm for global optimization. - Xiufen Zou; Yuanxiang Li; Lishan Kang; Zhijian Wu (Int. J. Comput. Math., 2003)

A New Dynamical Evolutionary Algorithm Based on Statistical Mechanics. - Yuanxiang Li; Xiufen Zou; Lishan Kang; Zbigniew Michalewicz (J. Comput. Sci. Technol., 2003)

A High Performance Multi-objective Evolutionary Algorithm Based on the Principles of Thermodynamics. - Xiufen Zou; Minzhong Liu; Lishan Kang; Jun He 004 (PPSN, 2004)

Fast annealing genetic algorithm for multi-objective optimization problems. - Xiufen Zou; Lishan Kang (Int. J. Comput. Math., 2005)

Modeling and Optimization of the Specificity in Cell Signaling Pathways Based on a High Performance Multi-objective Evolutionary Algorithm. - Xiufen Zou; Yu Chen 001; Zishu Pan (SEAL, 2006)

A New Evolutionary Decision Theory for Many-Objective Optimization Problems. - Zhuo Kang; Lishan Kang; Xiufen Zou; Minzhong Liu; Changhe Li; Ming Yang 003; Yan Li; Yuping Chen; Sanyou Zeng (ISICA, 2007)

An Effective Dynamical Multi-objective Evolutionary Algorithm for Solving Optimization Problems with High Dimensional Objective Space. - Minzhong Liu; Xiufen Zou; Lishan Kang (ISICA, 2007)

A Genetic Algorithm approach for selecting Tikhonov regularization parameter. - Chuansheng Wu; Jinrong He; Xiufen Zou (IEEE Congress on Evolutionary Computation, 2008)

Optimal coordination of protection relays using new hybrid evolutionary algorithm. - Chunlin Xu; Xiufen Zou; Rongxiang Yuan; Chuansheng Wu (IEEE Congress on Evolutionary Computation, 2008)

Robustness analysis of EGFR signaling network with a multi-objective evolutionary algorithm. - Xiufen Zou; Minzhong Liu; Zishu Pan (Biosyst., 2008)

A New Evolutionary Algorithm for Solving Many-Objective Optimization Problems. - Xiufen Zou; Yu Chen 001; Minzhong Liu; Lishan Kang (IEEE Trans. Syst. Man Cybern. Part B, 2008)

Performance assessment of DMOEA-DD with CEC 2009 MOEA competition test instances. - Minzhong Liu; Xiufen Zou; Yu Chen 001; Zhijian Wu (IEEE Congress on Evolutionary Computation, 2009)

A parallel evolutionary algorithm for optimal pulse-width modulation technique in power systems. - Rongxiang Yuan; Xiufen Zou; Chunlin Xu (GEC Summit, 2009)

The Data-Based Mathematical Modeling and Parameter Identification in JAK-STAT Signaling Pathway by Using a Hybrid Evolutionary Algorithm. - Wei Zhang 079; Xiufen Zou (ISICA (1), 2010)

A Population-Based Hybrid Extremal Optimization Algorithm. - Yu Chen 001; Kai Zhang; Xiufen Zou (ICIC (3), 2011)

Drift conditions for estimating the first hitting times of evolutionary algorithms. - Yu Chen 001; Xiufen Zou; Jun He 004 (Int. J. Comput. Math., 2011)

Convergence of multi-objective evolutionary algorithms to a uniformly distributed representation of the Pareto front. - Yu Chen 001; Xiufen Zou; Weicheng Xie 001 (Inf. Sci., 2011)

Synchronization ability of coupled cell-cycle oscillators in changing environments. - Wei Zhang 079; Xiufen Zou (BMC Syst. Biol., 2012)

Iteration and optimization scheme for the reconstruction of 3D surfaces based on non-uniform rational B-splines. - Wei-Cheng Xie 001; Xiu-Fen Zou; Jian-Dong Yang; Jie-Bin Yang (Comput. Aided Des., 2012)

Construction of the influenza A virus infection-induced cell-specific inflammatory regulatory network based on mutual information and optimization. - Suoqin Jin; Xiufen Zou (BMC Syst. Biol., 2013)

A triangulation-based hole patching method using differential evolution. - Wei-Cheng Xie 001; Xiu-Fen Zou (Comput. Aided Des., 2013)

Complex Dynamical Analysis of a Coupled Network from Innate Immune responses. - Jinying Tan; Xiufen Zou (Int. J. Bifurc. Chaos, 2013)

Diversity-maintained differential evolution embedded with gradient-based local search. - Weicheng Xie 001; Wei Yu 009; Xiufen Zou (Soft Comput., 2013)

How can surrogates influence the convergence of evolutionary algorithms? - Yu Chen 001; Weicheng Xie 001; Xiufen Zou (Swarm Evol. Comput., 2013)

Systematic Analysis of the Mechanisms of Virus-Triggered Type I IFN Signaling Pathways through Mathematical Modeling. - Wei Zhang 079; Xiufen Zou (IEEE ACM Trans. Comput. Biol. Bioinform., 2013)

Performance Analysis of a (1+1) Surrogate-Assisted Evolutionary Algorithm. - Yu Chen 001; Xiufen Zou (ICIC (1), 2014)

Runtime analysis of a multi-objective evolutionary algorithm for obtaining finite approximations of Pareto fronts. - Yu Chen 001; Xiufen Zou (Inf. Sci., 2014)

Estimation of control Energy and control Strategies for Complex Networks. - Dingjie Wang; Suoqin Jin; Fang-Xiang Wu; Xiufen Zou (Adv. Complex Syst., 2015)

Optimal Control Strategy for Abnormal Innate Immune Response. - Jinying Tan; Xiufen Zou (Comput. Math. Methods Medicine, 2015)

Inferring Gene Regulatory Network Using An Evolutionary Multi-Objective Method. - Yu Chen 001; Xiufen Zou (CoRR, 2015)

Mathematical Modeling and Nonlinear Dynamical Analysis of Cell Growth in Response to Antibiotics. - Suoqin Jin; Lili Niu; Gang Wang 018; Xiufen Zou (Int. J. Bifurc. Chaos, 2015)

A binary differential evolution algorithm learning from explored solutions. - Yu Chen 001; Weicheng Xie 001; Xiufen Zou (Neurocomputing, 2015)

Mathematical modeling reveals the mechanisms of feedforward regulation in cell fate decisions in budding yeast. - Wenlong Li; Ming Yi; Xiufen Zou (Quant. Biol., 2015)

A New Method for Detecting Protein Complexes based on the Three Node Cliques. - Wei Zhang 079; Xiufen Zou (IEEE ACM Trans. Comput. Biol. Bioinform., 2015)

Inference of genetic regulatory network for stem cell using single cells expression data. - Jiangyong Wei; Xiaohua Hu 001; Xiufen Zou; Tianhai Tian (BIBM, 2016)

Identifying disease modules and components of viral infections based on multi-layer networks. - Yuanyuan Li; Xiufen Zou (Sci. China Inf. Sci., 2016)

Qualitative Analysis of Critical Transitions in Complex Disease Propagation from a Dynamical Systems Perspective. - Gang Wang 018; Xiufen Zou (Int. J. Bifurc. Chaos, 2016)

Control Energy and controllability of multilayer Networks. - Dingjie Wang; Xiufen Zou (Adv. Complex Syst., 2017)

Inference of Biochemical S-Systems via Mixed-Variable Multiobjective Evolutionary Optimization. - Yu Chen 001; Dong Chen; Xiufen Zou (Comput. Math. Methods Medicine, 2017)

Several Indicators of Critical Transitions for Complex Diseases Based on Stochastic Analysis. - Gang Wang 018; Yuanyuan Li; Xiufen Zou (Comput. Math. Methods Medicine, 2017)

Mathematical modeling and quantitative analysis of HIV-1 Gag trafficking and polymerization. - Yuewu Liu; Xiufen Zou (PLoS Comput. Biol., 2017)

Trajectory Control in Nonlinear Networked Systems and Its Applications to Complex Biological Systems. - Suoqin Jin; Dingjie Wang; Xiufen Zou (SIAM J. Appl. Math., 2018)

Correction to "Detecting Essential Proteins Based on Network Topology, Gene Expression Data, and Gene Ontology Information". - Wei Zhang 079; Jia Xu 002; Yuanyuan Li; Xiufen Zou (IEEE ACM Trans. Comput. Biol. Bioinform., 2018)

Detecting Essential Proteins Based on Network Topology, Gene Expression Data, and Gene Ontology Information. - Wei Zhang 079; Jia Xu 002; Yuanyuan Li; Xiufen Zou (IEEE ACM Trans. Comput. Biol. Bioinform., 2018)

Control of multilayer biological networks and applied to target identification of complex diseases. - Wei Zheng; Dingjie Wang; Xiufen Zou (BMC Bioinform., 2019)

Identification of Interaction Clusters Using a Semi-supervised Hierarchical Clustering Method. - Yu Chen 001; Yuanyuan Yang; Yaochu Jin; Xiufen Zou (CoRR, 2019)

Integrating network topology, gene expression data and GO annotation information for protein complex prediction. - Wei Zhang 079; Jia Xu 002; Yuanyuan Li; Xiufen Zou (J. Bioinform. Comput. Biol., 2019)

Inferring Large-Scale Gene Regulatory Networks Using a Randomized Algorithm Based on Singular Value Decomposition. - Anjing Fan; Haitao Wang; Hua Xiang 002; Xiufen Zou (IEEE ACM Trans. Comput. Biol. Bioinform., 2019)

Tensor-based mathematical framework and new centralities for temporal multilayer networks. - Dingjie Wang; Wei Yu 009; Xiufen Zou (Inf. Sci., 2020)

scPADGRN: A preconditioned ADMM approach for reconstructing dynamic gene regulatory network using single-cell RNA sequencing data. - Xiao Zheng; Yuan Huang; Xiufen Zou (PLoS Comput. Biol., 2020)

scRCMF: Identification of Cell Subpopulations and Transition States From Single-Cell Transcriptomes. - Xiaoying Zheng; Suoqin Jin; Qing Nie; Xiufen Zou (IEEE Trans. Biomed. Eng., 2020)

Predicting Essential Proteins by Integrating Network Topology, Subcellular Localization Information, Gene Expression Profile and GO Annotation Data. - Wei Zhang 079; Jia Xu 002; Xiufen Zou (IEEE ACM Trans. Comput. Biol. Bioinform., 2020)

Influence of the Binomial Crossover on Performance of Randomized Search Heuristics. - Cong Wang; Yu Chen 001; Jun He 004; Xiufen Zou (CoRR, 2021)

Data-Driven Mathematical Modeling and Dynamical Analysis for SARS-CoV-2 Coinfection with Bacteria. - Yu Zhou; Mingzhan Huang; Ying'an Jiang; Xiufen Zou (Int. J. Bifurc. Chaos, 2021)

Data-driven multi-scale mathematical modeling of SARS-CoV-2 infection reveals heterogeneity among COVID-19 patients. - Shun Wang 001; Mengqian Hao; Zishu Pan; Jinzhi Lei; Xiufen Zou (PLoS Comput. Biol., 2021)

scASK: A Novel Ensemble Framework for Classifying Cell Types Based on Single-cell RNA-seq Data. - Bo Liu 084; Fang-Xiang Wu; Xiufen Zou (IEEE J. Biomed. Health Informatics, 2021)

SCCLRR: A Robust Computational Method for Accurate Clustering Single Cell RNA-Seq Data. - Wei Zhang 079; Yuanyuan Li; Xiufen Zou (IEEE J. Biomed. Health Informatics, 2021)

Data-driven mathematical modeling and quantitative analysis of cell dynamics in the tumor microenvironment. - Sicheng Li 008; Shun Wang 001; Xiufen Zou (Comput. Math. Appl., 2022)

scLRTD : A Novel Low Rank Tensor Decomposition Method for Imputing Missing Values in Single-Cell Multi-Omics Sequencing Data. - Zhijie Ni; Xiaoying Zheng; Xiao Zheng; Xiufen Zou (IEEE ACM Trans. Comput. Biol. Bioinform., 2022)

Mathematical Modeling and Dynamical Analysis for Tumor Cells and Tumor Propagating Cells Controlled by G9a Inhibitors. - Juan Shen; Zhihao Yao 003; Xuewen Tan; Xiufen Zou (Int. J. Bifurc. Chaos, 2023)

Mathematical modeling and dynamic analysis for cancer resistance incorporating persister cells. - Ke Qi; Shun Wang 001; Yuyang Xiao; Xiufen Zou (Commun. Nonlinear Sci. Numer. Simul., 2024)

Integrating multiscale mathematical modeling and multidimensional data reveals the effects of epigenetic instability on acquired drug resistance in cancer. - Shun Wang 001; Jinzhi Lei; Xiufen Zou; Suoqin Jin (PLoS Comput. Biol., 2025)

Mathematical Modeling and Solution Landscape Reveal Cancer Progression Dynamics in Tumor Ecological Microenvironment. - Shun Wang 001; Tengfei Wang; Shuonan Wu; Lei Zhang 061; Xiufen Zou (SIAM J. Appl. Math., 2025)

PITCH: A Pathway-Induced Prioritization of Personalized Cancer Driver Genes Based on Higher-Order Interactions. - Yuhe Wang; Suoqin Jin; Xiufen Zou (IEEE J. Biomed. Health Informatics, 2025)