Whole Genome Phylogeny Based on Clustered Signature String Composition. - Xiaomeng Wu; Guohui Lin; Xiu-Feng Wan; Dong Xu 002 (CSB Workshops, 2005)

Design of long oligonucleotide probes for functional gene detection in a microbial community. - Won-Hyong Chung; Sung-Keun Rhee; Xiu-Feng Wan; Jin-Woo Bae; Zhe-Xue Quan; Yong-Ha Park (Bioinform., 2005)

Intrinsic Terminator Prediction and Its Application in Synechococcus sp. WH8102. - Xiu-Feng Wan; Dong Xu (J. Comput. Sci. Technol., 2005)

Phylogenetic analysis using complete signature information of whole genomes and clustered Neighbour-Joining method. - Xiaomeng Wu; Xiu-Feng Wan; Gang Wu 020; Dong Xu 002; Guohui Lin (Int. J. Bioinform. Res. Appl., 2006)

Rnall: an Efficient Algorithm for Predicting Rna Local Secondary Structural Landscape in Genomes. - Xiu-Feng Wan; Guohui Lin; Dong Xu 002 (J. Bioinform. Comput. Biol., 2006)

A quantitative genotype algorithm reflecting H5N1 Avian influenza niches. - Xiu-Feng Wan; Guorong Chen; Feng Luo 001; Michael Emch; Ruben O. Donis (Bioinform., 2007)

Nucleotide composition string selection in HIV-1 subtyping using whole genomes. - Xiaomeng Wu; Zhipeng Cai 001; Xiu-Feng Wan; Tin Hoang; Randy Goebel; Guohui Lin (Bioinform., 2007)

CodonO: codon usage bias analysis within and across genomes. - Michael C. Angellotti; Shafquat B. Bhuiyan; Guorong Chen; Xiu-Feng Wan (Nucleic Acids Res., 2007)

Exploring Core/Periphery Structures in Protein Interaction Networks Provides Structure-Property Relation Insights. - Thomas Grindinger; Feng Luo 001; Xiu-Feng Wan; Richard H. Scheuermann (BIBM, 2008)

Identifying a few foot-and-mouth disease virus signature nucleotide strings for computational genotyping. - Guohui Lin; Zhipeng Cai 001; Junfeng Wu; Xiu-Feng Wan; Lizhe Xu; Randy Goebel (BMC Bioinform., 2008)

Ubiquitous Reassortments in influenza a viruses. - Xiu-Feng Wan; Mufit Ozden; Guohui Lin (J. Bioinform. Comput. Biol., 2008)

Core and periphery structures in protein interaction networks. - Feng Luo 001; Bo Li 036; Xiu-Feng Wan; Richard H. Scheuermann (BMC Bioinform., 2009)

Development of Chemical Bond based Elastic Network Model and its application in identifying functional motions in H5N1 highly pathogenic avian influenza viruses. - Yunho Jang; Xiu-Feng Wan (Int. J. Bioinform. Res. Appl., 2010)

A Computational Framework for Influenza Antigenic Cartography. - Zhipeng Cai; Tong Zhang 001; Xiu-Feng Wan (PLoS Comput. Biol., 2010)

AntigenMap 3D: an online antigenic cartography resource. - J. Lamar Barnett; Jialiang Yang; Zhipeng Cai; Tong Zhang 001; Xiu-Feng Wan (Bioinform., 2012)

Mixture model analysis reflecting dynamics of the population diversity of 2009 pandemic H1N1 influenza virus. - Li-Ping Long; Changhe Yuan; Zhipeng Cai; Huiping Xu; Xiu-Feng Wan (Silico Biol., 2012)

BinAligner: a heuristic method to align biological networks. - Jialiang Yang; Jun Li 068; Stefan Grünewald; Xiu-Feng Wan (BMC Bioinform., 2013)

Quartet-based methods to reconstruct phylogenetic networks. - Jialiang Yang; Stefan Grünewald; Yifei Xu; Xiu-Feng Wan (BMC Syst. Biol., 2014)

Generalized Hierarchical Sparse Model for Arbitrary-Order Interactive Antigenic Sites Identification in Flu Virus Data. - Lei Han 001; Yu Zhang 006; Xiu-Feng Wan; Tong Zhang 001 (KDD, 2016)

Graph-guided multi-task sparse learning model: a method for identifying antigenic variants of influenza A(H3N2) virus. - Lei Han 001; Lei Li; Feng Wen; Lei Zhong; Tong Zhang 001; Xiu-Feng Wan (Bioinform., 2019)

Prediction of DNA-binding proteins by interaction fusion feature representation and selective ensemble. - Wenjie You; Zijiang Yang 001; Guangbao Guo; Xiu-Feng Wan; Guoli Ji (Knowl. Based Syst., 2019)

Multi-task learning sparse group lasso: a method for quantifying antigenicity of influenza A(H1N1) virus using mutations and variations in glycosylation of Hemagglutinin. - Lei Li; Deborah Chang; Lei Han 001; Xiaojian Zhang; Joseph Zaia; Xiu-Feng Wan (BMC Bioinform., 2020)