A sub-pathway-based approach for identifying drug response principal network. - Xiujie Chen; Jiankai Xu; Bangqing Huang; Jin Li 024; Xin Wu; Ling Ma; Xiaodong Jia; Xiusen Bian; Fujian Tan; Lei Liu; Sheng Chen; Xia Li 004 (Bioinform., 2011)

Computational drug repositioning based on the relationships between substructure-indication. - Jingbo Yang; Denan Zhang; Lei Liu; Guoqi Li; Yiyang Cai; Yan Zhang; Hongbo Jin; Xiujie Chen (Briefings Bioinform., 2021)

Computational Prediction of Drug Phenotypic Effects Based on Substructure-Phenotype Associations. - Jingbo Yang; Denan Zhang; Yiyang Cai; Kexin Yu; Mingming Li; Lei Liu; Xiujie Chen (IEEE ACM Trans. Comput. Biol. Bioinform., 2023)

Crosstalk of different cell-death patterns predicts prognosis and drug sensitivity in glioma. - Meini Yu; Diwei Huo; Kexin Yu; Kun Zhou; Fei Xu; Qingkang Meng; Yiyang Cai; Xiujie Chen (Comput. Biol. Medicine, 2024)

DAPredict: a database for drug action phenotype prediction. - Qingkang Meng; Yiyang Cai; Kun Zhou; Fei Xu; Diwei Huo; Hongbo Xie; Meini Yu; Denan Zhang; Xiujie Chen (Database J. Biol. Databases Curation, 2024)

Exploring the Role of Knowledge Graph-Based RAG in Japanese Medical Question Answering with Small-Scale LLMs. - Yingjian Chen; Feiyang Li; Xingyu Song; Tianxiao Li; Zixin Xu; Xiujie Chen; Issey Sukeda; Irene Li (SLM4Health@AIME, 2025)