Modeling nonlinearity in dilution design microarray data. - Xiuwen Zheng 001; Hung-Chung Huang; Wenyuan Li 005; Peng Liu 007; Quan-Zhen Li; Ying Liu 007 (Bioinform., 2007)

GWASTools: an R/Bioconductor package for quality control and analysis of genome-wide association studies. - Stephanie M. Gogarten; Tushar Bhangale; Matthew P. Conomos; Cecelia A. Laurie; Caitlin P. McHugh; Ian S. Painter; Xiuwen Zheng 001; David R. Crosslin; David Levine; Thomas Lumley; Sarah C. Nelson; Ken Rice; et al. (Bioinform., 2012)

A high-performance computing toolset for relatedness and principal component analysis of SNP data. - Xiuwen Zheng 001; David Levine; Jess Shen; Stephanie M. Gogarten; Cathy C. Laurie; Bruce S. Weir (Bioinform., 2012)

SeqArray - a storage-efficient high-performance data format for WGS variant calls. - Xiuwen Zheng 001; Stephanie M. Gogarten; Michael F. Lawrence; Adrienne Stilp; Matthew P. Conomos; Bruce S. Weir; Cathy C. Laurie; David Levine (Bioinform., 2017)

SAIGEgds - an efficient statistical tool for large-scale PheWAS with mixed models. - Xiuwen Zheng 001; J. Wade Davis (Bioinform., 2021)

FAVOR: functional annotation of variants online resource and annotator for variation across the human genome. - Hufeng Zhou; Theodore Arapoglou; Xihao Li; Zilin Li; Xiuwen Zheng 001; Jill Moore; Abhijith Asok; Sushant Kumar; Elizabeth E. Blue; Steven Buyske; Nancy J. Cox; Adam Felsenfeld; et al. (Nucleic Acids Res., 2023)