Life-iNet: A Structured Network-Based Knowledge Exploration and Analytics System for Life Sciences. - Xiang Ren 001; Jiaming Shen; Meng Qu; Xuan Wang 008; Zeqiu Wu; Qi Zhu 008; Meng Jiang 001; Fangbo Tao; Saurabh Sinha; David Liem; Peipei Ping; Richard M. Weinshilboum; et al. (ACL (System Demonstrations), 2017)

Open Information Extraction with Meta-pattern Discovery in Biomedical Literature. - Xuan Wang 008; Yu Zhang 044; Qi Li 012; Yinyin Chen; Jiawei Han 001 (BCB, 2018)

PENNER: Pattern-enhanced Nested Named Entity Recognition in Biomedical Literature. - Xuan Wang 008; Yu Zhang 044; Qi Li 012; Cathy H. Wu; Jiawei Han 001 (BIBM, 2018)

Pattern Discovery for Wide-Window Open Information Extraction in Biomedical Literature. - Qi Li 012; Xuan Wang 008; Yu Zhang 044; Fei Ling; Cathy H. Wu; Jiawei Han 001 (BIBM, 2018)

Distantly Supervised Biomedical Named Entity Recognition with Dictionary Expansion. - Xuan Wang 008; Yu Zhang 044; Qi Li 012; Xiang Ren 001; Jingbo Shang; Jiawei Han 001 (BIBM, 2019)

HiGitClass: Keyword-Driven Hierarchical Classification of GitHub Repositories. - Yu Zhang 044; Frank F. Xu; Sha Li; Yu Meng 001; Xuan Wang 008; Qi Li 012; Jiawei Han 001 (ICDM, 2019)

Cross-type biomedical named entity recognition with deep multi-task learning. - Xuan Wang 008; Yu Zhang 044; Xiang Ren 001; Yuhao Zhang 004; Marinka Zitnik; Jingbo Shang; Curtis P. Langlotz; Jiawei Han 001 (Bioinform., 2019)

EVIDENCEMINER: Textual Evidence Discovery for Life Sciences. - Xuan Wang 008; Yingjun Guan; Weili Liu; Aabhas Chauhan; Enyi Jiang; Qi Li 012; David Liem; Dibakar Sigdel; John Caufield; Peipei Ping; Jiawei Han 001 (ACL (demo), 2020)

Fine-Grained Named Entity Recognition with Distant Supervision in COVID-19 Literature. - Xuan Wang 008; Xiangchen Song; Bangzheng Li; Kang Zhou 002; Qi Li 012; Jiawei Han 001 (BIBM, 2020)

Pattern-enhanced Named Entity Recognition with Distant Supervision. - Xuan Wang 008; Yingjun Guan; Yu Zhang 044; Qi Li 012; Jiawei Han 001 (IEEE BigData, 2020)

Textual Evidence Mining via Spherical Heterogeneous Information Network Embedding. - Xuan Wang 008; Yu Zhang 044; Aabhas Chauhan; Qi Li 012; Jiawei Han 001 (IEEE BigData, 2020)

Minimally Supervised Categorization of Text with Metadata. - Yu Zhang 044; Yu Meng 001; Jiaxin Huang 001; Frank F. Xu; Xuan Wang 008; Jiawei Han 001 (SIGIR, 2020)

Comprehensive Named Entity Recognition on CORD-19 with Distant or Weak Supervision. - Xuan Wang 008; Xiangchen Song; Yingjun Guan; Bangzheng Li; Jiawei Han 001 (CoRR, 2020)

Automatic Textual Evidence Mining in COVID-19 Literature. - Xuan Wang 008; Weili Liu; Aabhas Chauhan; Yingjun Guan; Jiawei Han 001 (CoRR, 2020)

COVID-19 Literature Knowledge Graph Construction and Drug Repurposing Report Generation. - Qingyun Wang 005; Manling Li; Xuan Wang 008; Nikolaus Nova Parulian; Guangxing Han; Jiawei Ma; Jingxuan Tu; Ying Lin; Haoran Zhang 004; Weili Liu; Aabhas Chauhan; Yingjun Guan; et al. (CoRR, 2020)

InterHG: an Interpretable and Accurate Model for Hypothesis Generation. - Haoyu Wang 004; Xuan Wang 008; Yaqing Wang 001; Guangxu Xun; Kishlay Jha; Jing Gao 004 (BIBM, 2021)

Distantly-Supervised Named Entity Recognition with Noise-Robust Learning and Language Model Augmented Self-Training. - Yu Meng 001; Yunyi Zhang 001; Jiaxin Huang 001; Xuan Wang 008; Yu Zhang 044; Heng Ji 001; Jiawei Han 001 (EMNLP (1), 2021)

ChemNER: Fine-Grained Chemistry Named Entity Recognition with Ontology-Guided Distant Supervision. - Xuan Wang 008; Vivian Hu; Xiangchen Song; Shweta Garg 004; Jinfeng Xiao; Jiawei Han 001 (EMNLP (1), 2021)

COVID-19 Literature Knowledge Graph Construction and Drug Repurposing Report Generation. - Qingyun Wang 005; Manling Li; Xuan Wang 008; Nikolaus Nova Parulian; Guangxing Han; Jiawei Ma; Jingxuan Tu; Ying Lin; Haoran Zhang 004; Weili Liu; Aabhas Chauhan; Yingjun Guan; et al. (NAACL-HLT (Demonstrations), 2021)

REACTCLASS: Cross-Modal Supervision for Subword-Guided Reactant Entity Classification. - Xuan Wang 008; Vivian Hu; Minhao Jiang; Yu Zhang 044; Jinfeng Xiao; Danielle Cherrice Loving; Heng Ji 001; Martin D. Burke; Jiawei Han 001 (BIBM, 2022)

New Frontiers of Scientific Text Mining: Tasks, Data, and Tools. - Xuan Wang 008; Hongwei Wang; Heng Ji 001; Jiawei Han 001 (KDD, 2022)

Seed-Guided Topic Discovery with Out-of-Vocabulary Seeds. - Yu Zhang 044; Yu Meng 001; Xuan Wang 008; Sheng Wang 012; Jiawei Han 001 (NAACL-HLT, 2022)

Accepted Tutorials at The Web Conference 2022. - Riccardo Tommasini 001; Senjuti Basu Roy; Xuan Wang 008; Hongwei Wang; Heng Ji 001; Jiawei Han 001; Preslav Nakov; Giovanni Da San Martino; Firoj Alam; Markus Schedl; Elisabeth Lex; Akash Bharadwaj; et al. (WWW (Companion Volume), 2022)

Text Augmented Open Knowledge Graph Completion via Pre-Trained Language Models. - Pengcheng Jiang; Shivam Agarwal; Bowen Jin; Xuan Wang 008; Jimeng Sun 001; Jiawei Han 001 (ACL (Findings), 2023)

ReactIE: Enhancing Chemical Reaction Extraction with Weak Supervision. - Ming Zhong 005; Siru Ouyang; Minhao Jiang; Vivian Hu; Yizhu Jiao; Xuan Wang 008; Jiawei Han 001 (ACL (Findings), 2023)

Reaction Miner: An Integrated System for Chemical Reaction Extraction from Textual Data. - Ming Zhong 005; Siru Ouyang; Yizhu Jiao; Priyanka Kargupta; Leo Luo; Yanzhen Shen; Bobby Zhou; Xianrui Zhong; Xuan Liu 009; Hongxiang Li; Jinfeng Xiao; Minhao Jiang; et al. (EMNLP (Demos), 2023)

DRGCoder: Explainable Clinical Coding for the Early Prediction of Diagnostic-Related Groups. - Daniel Hajialigol; Derek Kaknes; Tanner Barbour; Daphne Yao; Chris North 001; Jimeng Sun 001; David Liem; Xuan Wang 008 (EMNLP (Demos), 2023)

MEGClass: Extremely Weakly Supervised Text Classification via Mutually-Enhancing Text Granularities. - Priyanka Kargupta; Tanay Komarlu; Susik Yoon; Xuan Wang 008; Jiawei Han 001 (EMNLP (Findings), 2023)

MEGClass: Text Classification with Extremely Weak Supervision via Mutually-Enhancing Text Granularities. - Priyanka Kargupta; Tanay Komarlu; Susik Yoon; Xuan Wang 008; Jiawei Han 001 (CoRR, 2023)

OntoType: Ontology-Guided Zero-Shot Fine-Grained Entity Typing with Weak Supervision from Pre-Trained Language Models. - Tanay Komarlu; Minhao Jiang; Xuan Wang 008; Jiawei Han 001 (CoRR, 2023)

PromptRE: Weakly-Supervised Document-Level Relation Extraction via Prompting-Based Data Programming. - Chufan Gao; Xulin Fan; Jimeng Sun 001; Xuan Wang 008 (CoRR, 2023)

XAI-CLASS: Explanation-Enhanced Text Classification with Extremely Weak Supervision. - Daniel Hajialigol; Hanwen Liu; Xuan Wang 008 (CoRR, 2023)

TTM-RE: Memory-Augmented Document-Level Relation Extraction. - Chufan Gao; Xuan Wang 008; Jimeng Sun 001 (ACL (1), 2024)

EEG2Text: Open Vocabulary EEG-to-Text Translation with Multi-View Transformer. - Hanwen Liu; Daniel Hajialigol; Benny Antony; Aiguo Han; Xuan Wang 008 (IEEE Big Data, 2024)

OntoType: Ontology-Guided and Pre-Trained Language Model Assisted Fine-Grained Entity Typing. - Tanay Komarlu; Minhao Jiang; Xuan Wang 008; Jiawei Han 001 (KDD, 2024)

AI for Biomedicine in the Era of Large Language Models. - Zhenyu Bi; Sajib Acharjee Dip; Daniel Hajialigol; Sindhura Kommu; Hanwen Liu; Meng Lu; Xuan Wang 008 (CoRR, 2024)

EEG2TEXT: Open Vocabulary EEG-to-Text Decoding with EEG Pre-Training and Multi-View Transformer. - Hanwen Liu; Daniel Hajialigol; Benny Antony; Aiguo Han; Xuan Wang 008 (CoRR, 2024)

PathoLM: Identifying pathogenicity from the DNA sequence through the Genome Foundation Model. - Sajib Acharjee Dip; Uddip Acharjee Shuvo; Tran Chau; Haoqiu Song; Petra Choi; Xuan Wang 008; Liqing Zhang (CoRR, 2024)

STOC-TOT: Stochastic Tree-of-Thought with Constrained Decoding for Complex Reasoning in Multi-Hop Question Answering. - Zhenyu Bi; Daniel Hajialigol; Zhongkai Sun; Jie Hao; Xuan Wang 008 (CoRR, 2024)

DEBATE, TRAIN, EVOLVE: Self Evolution of Language Model Reasoning. - Gaurav Srivastava; Zhenyu Bi; Meng Lu; Xuan Wang 008 (CoRR, 2025)