Fast and accurate microRNA search using CNN. - Xubo Tang; Yanni Sun (BMC Bioinform., 2019)

Accurate identification of bacteriophages from metagenomic data using Transformer. - Jiayu Shang; Xubo Tang; Ruocheng Guo; Yanni Sun (Briefings Bioinform., 2022)

RdRp-based sensitive taxonomic classification of RNA viruses for metagenomic data. - Xubo Tang; Jiayu Shang; Yanni Sun (Briefings Bioinform., 2022)

PhaVIP: Phage VIrion Protein classification based on chaos game representation and Vision Transformer. - Jiayu Shang; Cheng Peng 020; Xubo Tang; Yanni Sun (Bioinform., 2023)

PhaTYP: predicting the lifestyle for bacteriophages using BERT. - Jiayu Shang; Xubo Tang; Yanni Sun (Briefings Bioinform., 2023)

VirBot: an RNA viral contig detector for metagenomic data. - Guowei Chen; Xubo Tang; Mang Shi; Yanni Sun (Bioinform., 2023)

HOTSPOT: hierarchical host prediction for assembled plasmid contigs with transformer. - Yongxin Ji; Jiayu Shang; Xubo Tang; Yanni Sun (Bioinform., 2023)

PhaGenus: genus-level classification of bacteriophages using a Transformer model. - Jiaojiao Guan; Cheng Peng 020; Jiayu Shang; Xubo Tang; Yanni Sun (Briefings Bioinform., 2023)

GOPhage: protein function annotation for bacteriophages by integrating the genomic context. - Jiaojiao Guan; Yongxin Ji; Cheng Peng 020; Wei Zou; Xubo Tang; Jiayu Shang; Yanni Sun (Briefings Bioinform., 2024)

PhaGO: Protein function annotation for bacteriophages by integrating the genomic context. - Jiaojiao Guan; Yongxin Ji; Cheng Peng 020; Wei Zou; Xubo Tang; Jiayu Shang; Yanni Sun (CoRR, 2024)