FragRep: A Web Server for Structure-Based Drug Design by Fragment Replacement. - Jinwen Shan; Xiaolin Pan; Xingyu Wang; Xudong Xiao; Changge Ji (J. Chem. Inf. Model., 2020)

MolHyb: A Web Server for Structure-Based Drug Design by Molecular Hybridization. - Hao Wang; Xiaolin Pan; Yueqing Zhang; Xingyu Wang; Xudong Xiao; Changge Ji (J. Chem. Inf. Model., 2022)

MolTaut: A Tool for the Rapid Generation of Favorable Tautomer in Aqueous Solution. - Xiaolin Pan; Fanyu Zhao; Yueqing Zhang; Xingyu Wang; Xudong Xiao; John Z. H. Zhang; Changge Ji (J. Chem. Inf. Model., 2023)

MacGen: A Web Server for Structure-Based Macrocycle Design. - Zhihan Zhang; Dongliang Ke; Chengshan Jin; Weiyu Zhou; Xiaolin Pan; Yueqing Zhang; Xingyu Wang; Xudong Xiao; Changge Ji (J. Chem. Inf. Model., 2024)

FragGrow: A Web Server for Structure-Based Drug Design by Fragment Growing within Constraints. - Yueqing Zhang; Zhihan Zhang; Dongliang Ke; Xiaolin Pan; Xingyu Wang; Xudong Xiao; Changge Ji (J. Chem. Inf. Model., 2024)

ViDove: A Translation Agent System with Multimodal Context and Memory-Augmented Reasoning. - Yichen Lu; Wei Dai; Jiaen Liu; Ching Wing Kwok; Zongheng Wu; Xudong Xiao; Ao Sun; Sheng Fu; Jianyuan Zhan; Yian Wang; Takatomo Saito; Sicheng Lai (CoRR, 2025)