A Graph-Theoretic Method for Mining Functional Modules in Large Sparse Protein Interaction Networks. - Shi-Hua Zhang; Hong-Wei Liu; Xue-Mei Ning; Xiang-Sun Zhang (ICDM Workshops, 2006)

Prediction of Protein Complexes Based on Protein Interaction Data and Functional Annotation Data Using Kernel Methods. - Shi-Hua Zhang; Xue-Mei Ning; Hong-Wei Liu; Xiang-Sun Zhang (ICIC (3), 2006)

Identification of functional modules in a PPI network by clique percolation clustering. - Shi-Hua Zhang; Xue-Mei Ning; Xiang-Sun Zhang (Comput. Biol. Chem., 2006)

A hybrid graph-theoretic method for mining overlapping functional modules in large sparse protein interaction networks. - Shi-Hua Zhang; Hong-Wei Liu; Xue-Mei Ning; Xiang-Sun Zhang (Int. J. Data Min. Bioinform., 2009)

Determining modular organization of protein interaction networks by maximizing modularity density. - Shi-Hua Zhang; Xue-Mei Ning; Chris H. Q. Ding; Xiang-Sun Zhang (BMC Syst. Biol., 2010)

Local community extraction in directed networks. - Xue-Mei Ning; Zhaoqi Liu; Shihua Zhang (CoRR, 2015)