Robust and accurate deconvolution of tumor populations uncovers evolutionary mechanisms of breast cancer metastasis. - Yifeng Tao; Haoyun Lei; Xuecong Fu; Adrian V. Lee; Jian Ma 004; Russell Schwartz (Bioinform., 2020)

ConTreeDP: A consensus method of tumor trees based on maximum directed partition support problem. - Xuecong Fu; Russell Schwartz (BIBM, 2021)

Tumor heterogeneity assessed by sequencing and fluorescence in situ hybridization (FISH) data. - Haoyun Lei; E. Michael Gertz; Alejandro A. Schäffer; Xuecong Fu; Yifeng Tao; Kerstin Heselmeyer-Haddad; Irianna Torres; Guibo Li; Liqin Xu; Yong Hou; Kui Wu 005; Xulian Shi; et al. (Bioinform., 2021)

Joint Clustering of Single-Cell Sequencing and Fluorescence In Situ Hybridization Data for Reconstructing Clonal Heterogeneity in Cancers. - Xuecong Fu; Haoyun Lei; Yifeng Tao; Kerstin Heselmeyer-Haddad; Irianna Torres; Michael Dean; Thomas Ried; Russell Schwartz (J. Comput. Biol., 2021)

Reconstructing tumor clonal lineage trees incorporating single-nucleotide variants, copy number alterations and structural variations. - Xuecong Fu; Haoyun Lei; Yifeng Tao; Russell Schwartz (Bioinform., 2022)

Semi-deconvolution of bulk and single-cell RNA-seq data with application to metastatic progression in breast cancer. - Haoyun Lei; Xiaoyan A. Guo; Yifeng Tao; Kai Ding; Xuecong Fu; Steffi Oesterreich; Adrian V. Lee; Russell Schwartz (Bioinform., 2022)

Improving and evaluating deep learning models of cellular organization. - Huangqingbo Sun; Xuecong Fu; Serena Abraham; Shen Jin; Robert F. Murphy (Bioinform., 2022)

Sc-TUSV-Ext: Single-Cell Clonal Lineage Inference from Single Nucleotide Variants, Copy Number Alterations, and Structural Variants. - Nishat Anjum Bristy; Xuecong Fu; Russell Schwartz (J. Comput. Biol., 2025)