Systematic discovery of the functional impact of somatic genome alterations in individual tumors through tumor-specific causal inference. - Chunhui Cai; Gregory F. Cooper; Kevin N. Lu; Xiaojun Ma; Shuping Xu; Zhenlong Zhao; Xueer Chen; Yifan Xue; Adrian V. Lee; Nathan Clark; Vicky Chen; Songjian Lu; et al. (PLoS Comput. Biol., 2019)

Mathematical model of hypoxia and tumor signaling interplay reveals the importance of hypoxia and cell-to-cell variability in tumor growth inhibition. - Emile P. Chen; Roy S. Song; Xueer Chen (BMC Bioinform., 2019)

An individualized causal framework for learning intercellular communication networks that define microenvironments of individual tumors. - Xueer Chen; Lujia Chen 001; Cornelius H. L. Kürten; Fattaneh Jabbari; Lazar Vujanovic; Ying Ding 003; Binfeng Lu; Kevin Lu; Aditi Kulkarni; Tracy Tabib; Robert Lafyatis; Gregory F. Cooper; et al. (PLoS Comput. Biol., 2022)