OpenAnnotate: a web server to annotate the chromatin accessibility of genomic regions. - Shengquan Chen; Qiao Liu 008; Xuejian Cui; Zhan-Ying Feng; Chunquan Li; Xiaowo Wang; Xuegong Zhang; Yong Wang; Rui Jiang 001 (Nucleic Acids Res., 2021)

SilencerDB: a comprehensive database of silencers. - Wanwen Zeng; Shengquan Chen; Xuejian Cui; Xiaoyang Chen; Zijing Gao; Rui Jiang 001 (Nucleic Acids Res., 2021)

collectNET: a web server for integrated inference of cell-cell communication network. - Yan Pan 014; Zijing Gao; Xuejian Cui; Zhen Li; Rui Jiang 001 (Database J. Biol. Databases Curation, 2024)

Discrete latent embedding of single-cell chromatin accessibility sequencing data for uncovering cell heterogeneity. - Xuejian Cui; Xiaoyang Chen; Zhen Li; Zijing Gao; Shengquan Chen; Rui Jiang 001 (Nat. Comput. Sci., 2024)