microDoR for HUMAN: A web server to predict mode of miRNA-mediated gene silencing. - Lei Cheng; Tao Zhou 005; Xuejiang Guo; Xiaofeng Song; Xiaobai Zhang; Ping Han; Yi-Ping Phoebe Chen; Jiahao Sha (BIBM Workshops, 2010)

Predicting miRNA-mediated gene silencing mode based on miRNA-target duplex features. - Xiaofeng Song; Lei Cheng; Tao Zhou 005; Xuejiang Guo; Xiaobai Zhang; Yi-Ping Phoebe Chen; Ping Han; Jiahao Sha (Comput. Biol. Medicine, 2012)

In silico identification and functional annotation of yeast E3 ubiquitin ligase Rsp5 substrates. - Xiaofeng Song; Lizhen Hu; Ping Han; Xuejiang Guo; Jiahao Sha (Int. J. Data Min. Bioinform., 2015)

Protein expression data improves gene function prediction. - Huadong Yang; Xiaofeng Song; Xuejiang Guo (BIBM, 2016)

CircAST: Full-length Assembly and Quantification of Alternatively Spliced Isoforms in Circular RNAs. - Jing Wu; Yan Li 071; Cheng Wang; Yiqiang Cui; Tianyi Xu; Chang Wang; Xiao Wang 016; Jiahao Sha; Bin Jiang 001; Kai Wang; Zhibin Hu; Xuejiang Guo; et al. (Genom. Proteom. Bioinform., 2019)

IRESbase: A Comprehensive Database of Experimentally Validated Internal Ribosome Entry Sites. - Jian Zhao 034; Yan Li 071; Cong Wang 028; Haotian Zhang; Hao Zhang 080; Bin Jiang 001; Xuejiang Guo; Xiaofeng Song (Genom. Proteom. Bioinform., 2020)

DeepSCP: utilizing deep learning to boost single-cell proteome coverage. - Bing Wang; Yue Wang 123; Yu Chen; Mengmeng Gao; Jie Ren; Yueshuai Guo; Chenghao Situ; Yaling Qi; Hui Zhu; Yan Li 071; Xuejiang Guo (Briefings Bioinform., 2022)

TransGCN: a semi-supervised graph convolution network-based framework to infer protein translocations in spatio-temporal proteomics. - Bing Wang; Xiangzheng Zhang; Xudong Han; Bingjie Hao; Yan Li 071; Xuejiang Guo (Briefings Bioinform., 2024)