Parse Concurrent Data Structures: BST as an Example. - Keren Zhou 003; Guocheng Niu; Wuzhao Zhang; Xueqi Li 001; Wenqin Liu (CoRR, 2015)

Accelerating large-scale genomic analysis with Spark. - Xueqi Li 001; Guangming Tan; Chunming Zhang; Xu Li; Zhonghai Zhang; Ninghui Sun (BIBM, 2016)

Quantifying and Mitigating Computational Inefficiency of Genomics Data Analysis. - Xueqi Li 001; Guangming Tan; Chunming Zhang; Xu Li; Zhonghai Zhang; Ninghui Sun (HPCC/SmartCity/DSS, 2017)

Accelerating FM-index Search for Genomic Data Processing. - Yuanrong Wang; Xueqi Li 001; Dawei Zang; Guangming Tan; Ninghui Sun (ICPP, 2018)

High-performance genomic analysis framework with in-memory computing. - Xueqi Li 001; Guangming Tan; Bingchen Wang; Ninghui Sun (PPoPP, 2018)

Efficient System Architecture in the Era of Monolithic 3D: Dynamic Inter-tier Interconnect and Processing-in-Memory. - Dylan C. Stow; Itir Akgun; Wenqin Huangfu; Yuan Xie 001; Xueqi Li 001; Gabriel H. Loh (DAC, 2019)

MEDAL: Scalable DIMM based Near Data Processing Accelerator for DNA Seeding Algorithm. - Wenqin Huangfu; Xueqi Li 001; Shuangchen Li; Xing Hu 001; Peng Gu; Yuan Xie 001 (MICRO, 2019)

PIM-Align: A Processing-in-Memory Architecture for FM-Index Search Algorithm. - Xueqi Li 001; Guangming Tan; Ninghui Sun (J. Comput. Sci. Technol., 2021)

Crescent: A GPU-based Targeted Nanopore Sequence Selector. - Tong Li; Xueqi Li 001; Yewen Li; Ruibao Song; Xun Wang 010 (BIBM, 2022)

MetaZip: a high-throughput and efficient accelerator for DEFLATE. - Ruihao Gao; Xueqi Li 001; Yewen Li; Xun Wang 010; Guangming Tan (DAC, 2022)

AlphaSparse: Generating High Performance SpMV Codes Directly from Sparse Matrices. - Zhen Du; Jiajia Li 001; Yinshan Wang; Xueqi Li 001; Guangming Tan; Ninghui Sun (SC, 2022)

TransCaller: An End-to-end Accelerated Transformer-based Nanopore Basecaller on GPUs. - Di Xu; Peiheng Zhang; Yang Zhang; Shunchen Shi; Xueqi Li 001 (BIBM, 2023)

NvWa: Enhancing Sequence Alignment Accelerator Throughput via Hardware Scheduling. - Yewen Li; Xueqi Li 001; Ruihao Gao; Wanqi Liu; Guangming Tan (HPCA, 2023)

Accelerating k-Shape Time Series Clustering Algorithm Using GPU. - Xun Wang 010; Ruibao Song; Junmin Xiao; Tong Li; Xueqi Li 001 (IEEE Trans. Parallel Distributed Syst., 2023)

BeeZip: Towards An Organized and Scalable Architecture for Data Compression. - Ruihao Gao; Zhichun Li; Guangming Tan; Xueqi Li 001 (ASPLOS (3), 2024)

ProXplore: A GPU-Enhanced Protein Discovery Engine. - Zewen Sun; Peiheng Zhang; Xingzhuo Fu; Xueqi Li 001 (BIBM, 2024)

CoPIM: A Collaborative Scheduling Framework for Commodity Processing-in-memory Systems. - Shunchen Shi; Xueqi Li 001; Zhaowu Pan; Peiheng Zhang; Ninghui Sun (ICCD, 2024)

Exploring the DIMM PIM Architecture for Accelerating Time Series Analysis. - Shunchen Shi; Fan Yang 096; Zhichun Li; Xueqi Li 001; Ninghui Sun (IEEE Comput. Archit. Lett., 2025)

FuHsi: Shifting Base-Calling Closer to Sequencer via In-Cache Acceleration. - Yewen Li; Guangming Tan; Xueqi Li 001 (J. Comput. Sci. Technol., 2025)