TCMMDB: a distributed multidatabase query system and its key technique implemention. - Xuezhong Zhou; Zhaohui Wu 001; Wei Lu (SMC, 2001)

A Multi-Label Chinese Text Categorization System Based on Boosting Algorithm. - Junli Chen; Xuezhong Zhou; Zhaohui Wu 001 (CIT, 2004)

Text Mining for Finding Functional Community of Related Genes Using TCM Knowledge. - Zhaohui Wu 001; Xuezhong Zhou; Baoyan Liu; Junli Chen (PKDD, 2004)

Distributional Character Clustering for Chinese Text Categorization. - Xuezhong Zhou; Zhaohui Wu 001 (PRICAI, 2004)

Ontology development for unified traditional Chinese medical language system. - Xuezhong Zhou; Zhaohui Wu 001; Aining Yin; Lancheng Wu; Weiyu Fan; Ruen Zhang (Artif. Intell. Medicine, 2004)

Text Mining for Clinical Chinese Herbal Medical Knowledge Discovery. - Xuezhong Zhou; Baoyan Liu; Zhaohui Wu 001 (Discovery Science, 2005)

Knowledge discovery in traditional Chinese medicine: State of the art and perspectives. - Yi Feng 004; Zhaohui Wu 001; Xuezhong Zhou; Zhongmei Zhou; Weiyu Fan (Artif. Intell. Medicine, 2006)

Integrative mining of traditional Chinese medicine literature and MEDLINE for functional gene networks. - Xuezhong Zhou; Baoyan Liu; Zhaohui Wu 001; Yi Feng 004 (Artif. Intell. Medicine, 2007)

Building Clinical Data Warehouse for Traditional Chinese Medicine Knowledge Discovery. - Xuezhong Zhou; Baoyan Liu; Yinghui Wang; Runsun Zhang; Ping Li 063; Shibo Chen; Yufeng Guo; Zhuye Gao; Hua Zhang (BMEI (1), 2008)

Network Analysis System for Traditional Chinese Medicine Clinical Data. - Xuezhong Zhou; Baoyan Liu (BMEI, 2009)

Network Analysis for Core Herbal Combination Knowledge Discovery from Clinical Chinese Medical Formulae. - Xuezhong Zhou; Runsun Zhang; Yinghui Wang; Ping Li 063; Baoyan Liu (DBTA, 2009)

An Uncertainty-Based Belief Selection Method for POMDP Value Iteration. - Qi Feng; Xuezhong Zhou; Houkuan Huang; Xiaoping Zhang (ECSQARU, 2009)

Empirical study on treatment of Coronary Heart Disease with famous doctors' method of regulating spleen and stomach based on simplified point-wise mutual information. - Ping Li 063; Xuezhong Zhou; Ronglin Gao; Sa Wu (BIBM Workshops, 2010)

Analysis of synergistic and antagonistic effects of TCM: Cases on diabetes and insomnia. - Martin McGrane; Simon K. Poon; Josiah Poon; Kelvin Chan; Clement Loy; Xuezhong Zhou; Runshun Zhang; Baoyan Liu; Paul Kwan; Daniel Man-yuen Sze; Junbin Gao (BIBM Workshops, 2010)

Studying herb-herb interaction for insomnia through the theory of complementarities. - Josiah Poon; Simon K. Poon; Dawei Yin; Kelvin Chan; Clement Loy; Xuezhong Zhou; Runshun Zhang; Baoyan Liu; Paul Kwan; Daniel Man-yuen Sze; Junbin Gao (BIBM Workshops, 2010)

Novel Two-Stage Analytic Approach in Extraction of Strong Herb-Herb Interactions in TCM Clinical Treatment of Insomnia. - Xuezhong Zhou; Josiah Poon; Paul Wing Hing Kwan; Runsun Zhang; Yinghui Wang; Simon K. Poon; Baoyan Liu; Daniel Man-yuen Sze (ICMB, 2010)

Development of traditional Chinese medicine clinical data warehouse for medical knowledge discovery and decision support. - Xuezhong Zhou; Shibo Chen; Baoyan Liu; Runsun Zhang; Yinghui Wang; Ping Li 063; Yufeng Guo; Hua Zhang; Zhuye Gao; Xiufeng Yan (Artif. Intell. Medicine, 2010)

Text mining for traditional Chinese medical knowledge discovery: A survey. - Xuezhong Zhou; Yonghong Peng; Baoyan Liu (J. Biomed. Informatics, 2010)

Analysis of herbal formulation in TCM: Infertility as a case study. - Simon K. Poon; Kei Fan; Josiah Poon; Clement Loy; Kelvin Chan; Paul Wing Hing Kwan; Xuezhong Zhou; Junbin Gao; Runsun Zhang; Yinghui Runshun; Daniel Man-yuen Sze (BIBM Workshops, 2011)

Co-evolutionary genetic algorithm in symptom-herb relationship discovery. - Josiah Poon; Dawei Yin; Simon K. Poon; Xuezhong Zhou; Runshun Zhang; Baoyan Liu; Daniel Man-yuen Sze (BIBM Workshops, 2011)

Multiscale backbone based network comparison algorithm for effective herbal interaction analysis. - Ninglin Du; Xuezhong Zhou; Runshun Zhang; Caiyan Jia; Jian Yu 001; Baoyan Liu (BMEI, 2011)

A novel approach in discovering significant interactions from TCM patient prescription data. - Simon K. Poon; Josiah Poon; Martin McGrane; Xuezhong Zhou; Paul Wing Hing Kwan; Runsun Zhang; Baoyan Liu; Junbin Gao; Clement Loy; Kelvin Chan; Daniel Man-yuen Sze (Int. J. Data Min. Bioinform., 2011)

Multidimensional analysis for Traditional Chinese Medicine diagnosis and treatment on hepatitis diseases. - Lanxin Bi; Xuezhong Zhou; Lei Zhang; Runshun Zhang (Healthcom, 2012)

Using link topic model to analyze traditional Chinese Medicine Clinical symptom-herb regularities. - Zaixing Jiang; Xuezhong Zhou; Xiaoping Zhang; Shibo Chen (Healthcom, 2012)

Clinical data preprocessing and case studies of POMDP for TCM treatment knowledge discovery. - Kai Liu; Xuezhong Zhou; Yan Feng; Jie Liu (Healthcom, 2012)

Enhanced data extraction, transforming and loading processing for Traditional Chinese Medicine clinical data warehouse. - Xishui Pan; Xuezhong Zhou; Hongmei Song; Runshun Zhang; Tingting Zhang (Healthcom, 2012)

Constructing ideas of health service platform for the elderly. - Huaxin Shi; Qi Xie; Xiaodong Li; Baoyan Liu; Shusong Mao; Xuezhong Zhou (Healthcom, 2012)

Real-world clinical data mining on TCM clinical diagnosis and treatment: A survey. - Xiaoping Zhang; Xuezhong Zhou; Runshun Zhang; Baoyan Liu; Qi Xie (Healthcom, 2012)

Integrating phenotype-genotype data for prioritization of candidate symptom genes. - Xing Li; Xuezhong Zhou; Yonghong Peng; Runshun Zhang; Jingqing Hu; Jian Yu 001; Baoyan Liu (BIBM, 2013)

Complex network approach for analyzing TCM clinical herb-symptom relationships. - Yubing Li; Xuezhong Zhou; Runshun Zhang; Yinghui Wang; Jingqing Hu; Qi Xie; Baoyan Liu (BIBM, 2013)

Frequent itemsets compressing based on minimum cover: An efficient method for mining medication law of Chinese herbs. - Lei Zhang; Yi-guo Wang; Qiming Zhang 004; Xuezhong Zhou; Jian Yu 001; Xiuhua Guo; Xia Li (BIBM, 2013)

Modelling traditional Chinese medicine therapy planning with POMDP. - Qi Feng; Xuezhong Zhou; Houkuan Huang; Xiaoping Zhang; Runshun Zhang (Int. J. Funct. Informatics Pers. Medicine, 2013)

Development of large-scale TCM corpus using hybrid named entity recognition methods for clinical phenotype detection: An initial study. - Lizhi Feng; Xuezhong Zhou; Haixun Qi; Runshun Zhang; Yinghui Wang; Baoyan Liu (CIBD, 2014)

Methods and technologies of traditional Chinese medicine clinical information datamation in real world. - Guanli Song; Yinghui Wang; Runshun Zhang; Baoyan Liu; Xuezhong Zhou; Guanbo Song; Liang Xie; Xinghuan Huang (CIBD, 2014)

Regularity of herbal formulae for HIV/AIDS patients with syndromes based on complex networks. - Jian Wang; Xiaoping Zhang; Biyan Liang; Xuezhong Zhou; Jiaming Lu; Liran Xu; Xin Deng; Xiuhui Li; Li Wang; Xinghua Tan; Yuxiang Mao; Guoliang Zhang; et al. (CIBD, 2014)

Integrating herb effect similarity for network-based herb target prediction. - Kuo Yang; Xuezhong Zhou; Runshun Zhang; Baoyan Liu; Lei Lei; Xiaoping Zhang; Hongwei Chu; Changkai Sun; Zhuye Gao; Hao Xu (BMEI, 2015)

PaReCat: Patient Record Subcategorization for Precision Traditional Chinese Medicine. - Edward W. Huang; Sheng Wang 012; Runshun Zhang; Baoyan Liu; Xuezhong Zhou; ChengXiang Zhai (BCB, 2016)

Similarity-based algorithms for Disease Terminology Mapping. - Shiwen Ma; Kuo Yang; Xuezhong Zhou; Xue Xu; Wenwen Liu (BIBM, 2016)

A conditional probabilistic model for joint analysis of symptoms, diseases, and herbs in traditional Chinese medicine patient records. - Sheng Wang 012; Edward W. Huang; Runshun Zhang; Xiaoping Zhang; Baoyan Liu; Xuezhong Zhou; ChengXiang Zhai (BIBM, 2016)

Extracting relations from traditional Chinese medicine literature via heterogeneous entity networks. - Huaiyu Wan; Marie-Francine Moens; Walter Luyten; Xuezhong Zhou; Qiaozhu Mei; Lu Liu 005; Jie Tang 001 (J. Am. Medical Informatics Assoc., 2016)

Framing Electronic Medical Records as Polylingual Documents in Query Expansion. - Edward W. Huang; Sheng Wang 012; Doris J. Lee; Runshun Zhang; Baoyan Liu; Xuezhong Zhou; ChengXiang Zhai (AMIA, 2017)

HEMnet: Integration of Electronic Medical Records with Molecular Interaction Networks and Domain Knowledge for Survival Analysis. - Edward W. Huang; Sheng Wang 012; Bingxue Li; Ran Zhang 008; Baoyan Liu; Runshun Zhang; Jie Liu; Xuezhong Zhou; Hongsheng Lin; ChengXiang Zhai (BCB, 2017)

Overlapping Functional Modules Detection in PPI Network with Pairwise Constrained Nonnegative Matrix Tri-Factorization. - Guangming Liu; Bianfang Chai; Kuo Yang; Xuezhong Zhou; Jian Yu 001 (BCB, 2017)

An analysis of human microbe-disease associations. - Wei Ma; Lu Zhang; Pan Zeng; Chuanbo Huang; Jianwei Li; Bin Geng; Jichun Yang; Wei Kong; Xuezhong Zhou; Qinghua Cui (Briefings Bioinform., 2017)

Discovery of Xuantoujiedu Decoction and its Molecular Mechanisms Using Integrated Network Analysis. - Lili Xu; Weilian Kong; Yinghui Wang; Xiaofeng Sun; Xuezhong Zhou; Runshun Zhang; Yanxing Xue; Weibin Wang (BIBM, 2018)

Analysis of Disease Comorbidity Patterns in a Large-Scale China Population. - Mengfei Guo; Yanan Yu; Tiancai Wen; Xiaoping Zhang; Baoyan Liu; Jin Zhang; Runshun Zhang; Yanning Zhang 001; Xuezhong Zhou (ICIC (2), 2018)

Heterogeneous network embedding for identifying symptom candidate genes. - Kuo Yang; Ning Wang 048; Guangming Liu; Ruyu Wang; Jian Yu 001; Runshun Zhang; Jianxin Chen; Xuezhong Zhou (J. Am. Medical Informatics Assoc., 2018)

Heterogeneous network propagation for herb target identification. - Kuo Yang; Guangming Liu; Ning Wang 048; Runshun Zhang; Jian Yu 001; Jianxin Chen; Xuezhong Zhou (BMC Medical Informatics Decis. Mak., 2018)

A Clustering Based Transfer Function for Volume Rendering Using Gray-Gradient Mode Histogram. - Yisha Lan; Yimin Ding; Xin Luo 001; Yanzhao Zhang; Chenxi Huang 001; E. Y. K. Ng; Weihong Huang; Xuezhong Zhou; Jie Su; Yonghong Peng; Zhicheng Wang; Yongqiang Cheng 001; et al. (IEEE Access, 2019)

Symptom-based network classification identifies distinct clinical subgroups of liver diseases with common molecular pathways. - Zixin Shu; Wenwen Liu; Huikun Wu; Mingzhong Xiao; Deng Wu; Ting Cao; Meng Ren; Junxiu Tao; Chuhua Zhang; Tangqing He; Xiaodong Li; Runshun Zhang; et al. (Comput. Methods Programs Biomed., 2019)

SymMap: an integrative database of traditional Chinese medicine enhanced by symptom mapping. - Yang Wu; Feilong Zhang; Kuo Yang; Shuangsang Fang; Dechao Bu; Hui Li 038; Liang Sun; Hairuo Hu; Kuo Gao; Wei Wang 269; Xuezhong Zhou; Yi Zhao 013; et al. (Nucleic Acids Res., 2019)

HerGePred: Heterogeneous Network Embedding Representation for Disease Gene Prediction. - Kuo Yang; Ruyu Wang; Guangming Liu; Zixin Shu; Ning Wang 048; Runshun Zhang; Jian Yu 001; Jianxin Chen; Xiaodong Li; Xuezhong Zhou (IEEE J. Biomed. Health Informatics, 2019)

Analysis of diabetic comorbidities and their interrelationships in 5227 Chinese patients with type 2 diabetes. - Yifei Wang; Ying Xing; Min Pi; Runshun Zhang; Xiong He; Xuezhong Zhou; Motan Qiu; Tiancai Wen (BIBM, 2020)

Network-based gene prediction for TCM symptoms. - Yinyan Wang; Kuo Yang; Zixin Shu; Dengying Yan; Xuezhong Zhou (BIBM, 2020)

Disease phenotype synonymous prediction through network representation learning from PubMed database. - Shiwen Ma; Kuo Yang; Ning Wang 048; Qiang Zhu; Zhuye Gao; Runshun Zhang; Baoyan Liu; Xuezhong Zhou (Artif. Intell. Medicine, 2020)

Integrated network analysis of symptom clusters across disease conditions. - Kezhi Lu; Kuo Yang; Edouard Niyongabo; Zixin Shu; Jingjing Wang; Kai Chang; Qunsheng Zou; Jiyue Jiang; Caiyan Jia; Baoyan Liu; Xuezhong Zhou (J. Biomed. Informatics, 2020)

TCMPR: TCM Prescription recommendation based on subnetwork term mapping and deep learning. - Xin Dong 017; Yi Zheng; Zixin Shu; Kai Chang; Dengying Yan; Jianan Xia; Qiang Zhu; Kunyu Zhong; Xinyan Wang 002; Kuo Yang; Xuezhong Zhou (BIBM, 2021)

COX-2 as the key target of LianXia NingXin Formula for treating Sympathetic Remodeling after Myocardial Infarction: pharmacological network prediction with experimental validation. - Yang Yang; Fangyuan Dai; Xin Ma; Xue Yu; Xuezhong Zhou; Ping Li 063 (BIBM, 2021)

Phenonizer: A fine-grained phenotypic named entity recognizer for Chinese clinical texts. - Qunsheng Zou; Kuo Yang; Kai Chang; Xiaoping Zhang; Xiaodong Li; Xuezhong Zhou (BIBM, 2021)

Research and Implementation of Real World Traditional Chinese Medicine Clinical Scientific Research Information Electronic Medical Record Sharing System. - Yu Tian; Qi Xie; Runshun Zhang; Xuezhong Zhou; Tiancai Wen; Lei Zhang; Xingping Zhang; Bin Wang; Xu Miao; Jie Yang; Baoyan Liu (BIBM, 2022)

RESurv: A Deep Survival Analysis Model to Reveal Population Heterogeneity by Individual Risk. - Qiguang Zheng; Qifan Shen; Xin Su; Kuo Yang; Zixin Shu; Xuezhong Zhou (BIBM, 2022)

A Chemical Domain Knowledge-Aware Framework for Multi-view Molecular Property Prediction. - Rui Hua; Xinyan Wang 002; Chuang Cheng; Qiang Zhu; Xuezhong Zhou (CCKS (Evaluation Track), 2022)

TMNP: a transcriptome-based multi-scale network pharmacology platform for herbal medicine. - Peng Li 004; Haoran Zhang; Wuxia Zhang; Yuanyuan Zhang; Lingmin Zhan; Ning Wang 048; Caiping Chen; Bangze Fu; Jinzhong Zhao; Xuezhong Zhou; Shuzhen Guo; Jianxin Chen (Briefings Bioinform., 2022)

Link Prediction based on Tensor Decomposition for the Knowledge Graph of COVID-19 Antiviral Drug. - Ting Jia; Yuxia Yang; Xi Lu; Qiang Zhu; Kuo Yang; Xuezhong Zhou (Data Intell., 2022)

PDGNet: Predicting Disease Genes Using a Deep Neural Network With Multi-View Features. - Kuo Yang; Yi Zheng; Kezhi Lu; Kai Chang; Ning Wang 048; Zixin Shu; Jian Yu 001; Baoyan Liu; Zhuye Gao; Xuezhong Zhou (IEEE ACM Trans. Comput. Biol. Bioinform., 2022)

Classification Characteristics of COPD Based on Combination of Disease and Syndrome in Real World. - Ning Xu; Kunyu Zhong; Kai Chang; Lifeng Fa; Jinlong Yu; Haibin Yu; Xuezhong Zhou; Lei Zhang (BIBM, 2023)

A Pre-training Framework for Knowledge Graph Completion. - Kuan Xu; Kuo Yang; Hanyang Dong; Xinyan Wang 002; Xuezhong Zhou (CoRR, 2023)

Knowledge Graph Completion based on Tensor Decomposition for Disease Gene Prediction. - Xinyan Wang 002; Ting Jia; Chongyu Wang; Kuan Xu; Zixin Shu; Kuo Yang; Xuezhong Zhou (CoRR, 2023)

A optimization framework for herbal prescription planning based on deep reinforcement learning. - Kuo Yang; Zecong Yu; Xin Su; Xiong He; Ning Wang 048; Qiguang Zheng; Feidie Yu; Zhuang Liu; Tiancai Wen; Xuezhong Zhou (CoRR, 2023)

SympGAN: A systematic knowledge integration system for symptom-gene associations network. - Kezhi Lu; Kuo Yang; Hailong Sun 007; Qian Zhang; Qiguang Zheng; Kuan Xu; Jianxin Chen; Xuezhong Zhou (Knowl. Based Syst., 2023)

DRONet: effectiveness-driven drug repositioning framework using network embedding and ranking learning. - Kuo Yang; Yuxia Yang; Shuyue Fan; Jianan Xia; Qiguang Zheng; Xin Dong 017; Jun Liu; Qiong Liu; Lei Lei; Yingying Zhang; Bing Li; Zhuye Gao; et al. (Briefings Bioinform., 2023)

TCM-FTP: Fine-Tuning Large Language Models for Herbal Prescription Prediction. - Xingzhi Zhou 002; Xin Dong; Chunhao Li; Yuning Bai; Yulong Xu; Ka Chun Cheung; Simon See; Xinpeng Song; Runshun Zhang; Xuezhong Zhou; Nevin L. Zhang (BIBM, 2024)

LMDTA: Molecular Pre-trained and Interaction Fine-tuned Attention Neural Network for Drug-Target Affinity Prediction. - Minjie Hu; Kuo Yang; Kuan Xu; Xuezhong Zhou (BIBM, 2024)

PresRecCD: A Novel Herbal Prescription Recommendation Framework with Cross-Domain Learning and Neural Collaborative Filtering. - Wansong Zhang; Xin Dong; Kuo Yang; Lei Zhang; Xinyu Wang; Rouye Huang; Runshun Zhang; Xuezhong Zhou (BIBM, 2024)

Benchmarking Biomedical Relation Knowledge in Large Language Models. - Fenghui Zhang; Kuo Yang; Chenqian Zhao; Haixu Li; Xin Dong 016; Haoyu Tian; Xuezhong Zhou (ISBRA (2), 2024)

Dynamic Feature Fusion Based on Consistency and Complementarity of Brain Atlases. - Qiye Lin; Jiaqi Zhao; Ruiwen Fan; Xuezhong Zhou; Jianan Xia (PRCV (15), 2024)

HTINet2: herb-target prediction via knowledge graph embedding and residual-like graph neural network. - Pengbo Duan; Kuo Yang; Xin Su; Shuyue Fan; Xin Dong; Fenghui Zhang; Xianan Li; Xiaoyan Xing; Qiang Zhu; Jian Yu 001; Xuezhong Zhou (Briefings Bioinform., 2024)

KDGene: knowledge graph completion for disease gene prediction using interactional tensor decomposition. - Xinyan Wang 002; Kuo Yang; Ting Jia; Fanghui Gu; Chongyu Wang; Kuan Xu; Zixin Shu; Jianan Xia; Qiang Zhu; Xuezhong Zhou (Briefings Bioinform., 2024)

ISPO: An Integrated Ontology of Symptom Phenotypes for Semantic Integration of Traditional Chinese Medical Data. - Zixin Shu; Rui Hua; Dengying Yan; Chenxia Lu; Ning Xu; Jun Li; Hui Zhu; Jia Zhang; Dan Zhao; Chenyang Hui; Junqiu Ye; Chu Liao; et al. (CoRR, 2024)

Deep representation learning from electronic medical records identifies distinct symptom based subtypes and progression patterns for COVID-19 prognosis. - Qiguang Zheng; Qifan Shen; Zixin Shu; Kai Chang; Kunyu Zhong; Yuhang Yan 004; Jia Ke; Jingjing Huang; Rui Su; Jianan Xia; Xuezhong Zhou (Int. J. Medical Informatics, 2024)

PresRecST: a novel herbal prescription recommendation algorithm for real-world patients with integration of syndrome differentiation and treatment planning. - Xin Dong 016; Chenxi Zhao; Xinpeng Song; Lei Zhang; Yu Liu; Jun Wu; Yiran Xu; Ning Xu; Jialing Liu; Haibin Yu; Kuo Yang; Xuezhong Zhou (J. Am. Medical Informatics Assoc., 2024)

Lingdan: enhancing encoding of traditional Chinese medicine knowledge for clinical reasoning tasks with large language models. - Rui Hua; Xin Dong 016; Yu Wei; Zixin Shu; Pengcheng Yang; Yunhui Hu; Shuiping Zhou; He Sun; Kaijing Yan; Xijun Yan; Kai Chang; Xiaodong Li; et al. (J. Am. Medical Informatics Assoc., 2024)

DAPNet: multi-view graph contrastive network incorporating disease clinical and molecular associations for disease progression prediction. - Haoyu Tian; Xiong He; Kuo Yang; Xinyu Dai; Yiming Liu; Fengjin Zhang; Zixin Shu; Qiguang Zheng; Shihua Wang; Jianan Xia; Tiancai Wen; Baoyan Liu; et al. (BMC Medical Informatics Decis. Mak., 2024)

KGCRR: An Effective Metric-Driven Knowledge Graph Completion Framework by Designing a Novel Upper Bound Function with Adaptive Approximation to Reciprocal Rank. - Kuan Xu; Kuo Yang; Jian Liu; Xiangkui Lu; Jun Wu; Xuezhong Zhou (AAAI, 2025)

Cross-modal alignment and contrastive learning for enhanced cancer survival prediction. - Tengfei Li; Xuezhong Zhou; Jingyan Xue; Lili Zeng; Qiang Zhu; Ruiping Wang; Haibin Yu; Jianan Xia (Comput. Methods Programs Biomed., 2025)