W-ChIPeaks: a comprehensive web application tool for processing ChIP-chip and ChIP-seq data. - Xun Lan; Russell Bonneville; Jeff Apostolos; Wangcheng Wu; Victor X. Jin (Bioinform., 2011)

iEnhancer-2L: a two-layer predictor for identifying enhancers and their strength by pseudo k-tuple nucleotide composition. - Bin Liu 014; Longyun Fang; Ren Long; Xun Lan; Kuo-Chen Chou (Bioinform., 2016)

Chrom-Lasso: a lasso regression-based model to detect functional interactions using Hi-C data. - Jingzhe Lu; Xu Wang; Keyong Sun; Xun Lan (Briefings Bioinform., 2021)

SIGNET: single-cell RNA-seq-based gene regulatory network prediction using multiple-layer perceptron bagging. - Qinhuan Luo; Yongzhen Yu; Xun Lan (Briefings Bioinform., 2022)