A Computational Approach to Reconstructing Gene Regulatory Networks. - Xutao Deng; Hesham H. Ali (CSB, 2003)

A Hidden Markov Model for Gene Function Prediction from Sequential Expression Data. - Xutao Deng; Hesham H. Ali (CSB, 2004)

A Dynamic Bayesian Network Model for Hierarchial Classification and its Application in Predicting Yeast Genes Functions. - Xutao Deng; Huimin Geng; Hesham H. Ali (AMCIS, 2005)

Message Passing Clustering with Stochastic Merging Based on Kernel Functions. - Huimin Geng; Xutao Deng; Hesham H. Ali (AMCIS, 2005)

On Clustering Biological Data Using Unsupervised and Semi-Supervised Message Passing. - Huimin Geng; Xutao Deng; Dhundy Bastola; Hesham H. Ali (BIBE, 2005)

Predicting Yeast Gene Function Based on Hidden Markov Models. - Xutao Deng; Huimin Geng; Hesham H. Ali (CATA, 2005)

Learning Yeast Gene Functions from Heterogeneous Sources of Data Using Hybrid Weighted Bayesian Networks. - Xutao Deng; Huimin Geng; Hesham H. Ali (CSB, 2005)

A Fast Iterative Algorithm for Identifying Feature Scales and Signed Fuzzy Measures in Generalized Choquet Integrals. - Xutao Deng; Zhenyuan Wang (FUZZ-IEEE, 2005)

A new clustering algorithm using message passing and its applications in analyzing microarray data. - Huimin Geng; Xutao Deng; Hesham H. Ali (ICMLA, 2005)

Link test - A statistical method for finding prostate cancer biomarkers. - Xutao Deng; Huimin Geng; Dhundy Bastola; Hesham H. Ali (Comput. Biol. Chem., 2006)

Joint Learning of Gene Functions - a Bayesian Network Model Approach. - Xutao Deng; Huimin Geng; Hesham H. Ali (J. Bioinform. Comput. Biol., 2006)

Virtual CGH: Prediction of Novel Regions of Chromosomal Alterations in Tumor from Gene Expression Profiling. - Huimin Geng; Javeed Iqbal; Xutao Deng; Wing C. Chan; Hesham H. Ali (HICSS, 2007)

Multiplicity Adjustment for Intersection-union Test: Detecting Overlapping Genes from Multiple Microarray Gene Lists. - Xutao Deng; Jun Xu; Charles Wang (IMSCCS, 2007)

Dynamics of asynchronous random Boolean networks with asynchrony generated by stochastic processes. - Xutao Deng; Huimin Geng; Mihaela Teodora Matache (Biosyst., 2007)

Improving the power for detecting overlapping genes from multiple DNA microarray-derived gene lists. - Xutao Deng; Jun Xu; Charles Wang (BMC Bioinform., 2008)

A Hidden Markov Model approach to predicting yeast gene function from sequential gene expression data. - Xutao Deng; Huimin Geng; Hesham H. Ali (Int. J. Bioinform. Res. Appl., 2008)

Message Passing Clustering (MPC): a knowledge-based framework for clustering under biological constraints. - Huimin Geng; Xutao Deng; Hesham H. Ali (Int. J. Data Min. Bioinform., 2008)

Probability fold change: A robust computational approach for identifying differentially expressed gene lists. - Xutao Deng; Jun Xu; James Hui; Charles Wang (Comput. Methods Programs Biomed., 2009)

SeqGene: a comprehensive software solution for mining exome- and transcriptome- sequencing data. - Xutao Deng (BMC Bioinform., 2011)

Simultaneous estimation of detection sensitivity and absolute copy number from digital PCR serial dilution. - Xutao Deng; Brian Custer; Michael P. Busch; Sonia Bakkour; Tzong-Hae Lee (Comput. Biol. Chem., 2017)

Assessing intra-lab precision and inter-lab repeatability of outgrowth assays of HIV-1 latent reservoir size. - Daniel I. S. Rosenbloom; Peter Bacchetti; Mars Stone; Xutao Deng; Ronald J. Bosch; Douglas D. Richman; Janet D. Siliciano; John W. Mellors; Steven G. Deeks; Roger G. Ptak; Rebecca Hoh; Sheila M. Keating; et al. (PLoS Comput. Biol., 2019)

Improved Lane Detection Network Based on Instance Segmentation. - Chang Hao Piao; Xutao Deng; Mingjie Liu (CONF-CDS, 2021)

Visual Sensor Layout Optimization of a Robotic Mobile Adhesive Removal System for Wind Turbine Blade Based on Simulation. - Bo Peng; Feifan Zheng; Fan Zhang; Shilin Ming; Yan Li; Xutao Deng; Zeyu Gong; Bo Tao (ICIRA (7), 2023)