DOCK 6: Incorporating hierarchical traversal through precomputed ligand conformations to enable large-scale docking. - Trent E. Balius; Y. Stanley Tan; Mayukh Chakrabarti (J. Comput. Chem., 2024)

Development of Receptor Desolvation Scoring and Covalent Sampling in DOCK 6: Methods Evaluated on a RAS Test Set. - Y. Stanley Tan; Mayukh Chakrabarti; Reed M. Stein; Lauren E. Prentis; Robert C. Rizzo; Tom Kurtzman; Marcus Fischer; Trent E. Balius (J. Chem. Inf. Model., 2025)