Determining contact energy function for continuous state models of globular protein conformations. - Y. Zenmei Ohkubo; Gordon M. Crippen (RECOMB, 2000)

Potential Energy Function for Continuous State Models of Globular Proteins. - Y. Zenmei Ohkubo; Gordon M. Crippen (J. Comput. Biol., 2000)

Elucidating the complex membrane binding of a protein with multiple anchoring domains using extHMMM. - Jesper J. Madsen; Y. Zenmei Ohkubo (PLoS Comput. Biol., 2024)