Exploring protein domain organization by recognition of secondary structure packing interfaces. - Lizong Deng; Aiping Wu; Wentao Dai; Tingrui Song; Ya Cui; Taijiao Jiang (Bioinform., 2014)

BioCircos.js: an interactive Circos JavaScript library for biological data visualization on web applications. - Ya Cui; Xiaowei Chen; Huaxia Luo; Zhen Fan 002; Jianjun Luo 001; Shunmin He; Haiyan Yue; Peng Zhang 050; Runsheng Chen (Bioinform., 2016)

Computational identification of piRNA targets on mouse mRNAs. - Jiao Yuan; Peng Zhang 047; Ya Cui; Jiajia Wang; Geir Skogerbø; Da-Wei Huang; Runsheng Chen; Shunmin He (Bioinform., 2016)

LncVar: a database of genetic variation associated with long non-coding genes. - Xiaowei Chen; Yajing Hao 001; Ya Cui; Zhen Fan 002; Shunmin He; Jianjun Luo 001; Runsheng Chen (Bioinform., 2017)

Dynamic-BM: multispecies Dynamic BodyMap database from temporal RNA-seq data. - Ya Cui; Xiaowei Chen; Yiwei Niu; Dongpeng Wang; Huaxia Luo; Zhen Fan 002; Dan Wang; Wei Wu 025; XueYi Teng; Shunmin He; Jianjun Luo 001; Runsheng Chen (Briefings Bioinform., 2018)

RAEdb: a database of enhancers identified by high-throughput reporter assays. - Zena Cai; Ya Cui; Zhiying Tan; Gaihua Zhang; Zhongyang Tan; Xinlei Zhang; Yousong Peng (Database J. Biol. Databases Curation, 2019)

Microsatellite instability status differentially associates with intratumoral immune microenvironment in human cancers. - Peng Zhang 050; Mingyue Liu; Ya Cui; Pan Zheng; Yang Liu (Briefings Bioinform., 2021)

interacCircos: an R package based on JavaScript libraries for the generation of interactive circos plots. - Zhe Cui; Ya Cui; Tianyi Zang; Yadong Wang (Bioinform., 2021)

From Reads to Insights: Integrative Pipelines for Biological Interpretation of ATAC-seq Data. - Ya Cui; Jason Sheng Li; Wei Li 036 (Genom. Proteom. Bioinform., 2021)

3′aQTL-atlas: an atlas of 3′UTR alternative polyadenylation quantitative trait loci across human normal tissues. - Ya Cui; Fanglue Peng; Dan Wang; Yumei Li 010; Jason Sheng Li; Lei Li; Wei Li 036 (Nucleic Acids Res., 2022)

Population-scale genetic control of alternative polyadenylation and its association with human diseases. - Lei Li; Yumei Li 010; Xudong Zou; Fuduan Peng; Ya Cui; Eric J. Wagner; Wei Li 036 (Quant. Biol., 2022)

A Multi-Contrast Translation-Based Registration Approach for Distortion Correction in DTI. - Ya Cui; Siyu Yuan; Zhenkui Wang; Li Tong; Jie Luo (EMBC, 2024)