Computational prediction of drug-drug interactions based on drugs functional similarities. - Reza Ferdousi; Reza Safdari; Yadollah Omidi (J. Biomed. Informatics, 2017)

A novel in silico minigene vaccine based on CD4+ T-helper and B-cell epitopes of EG95 isolates for vaccination against cystic echinococcosis. - Mohammad M. Pourseif; Gholamali Moghaddam; Behrouz Naghili; Nazli Saeedi; Sepideh Parvizpour; Ahmad Nematollahi; Yadollah Omidi (Comput. Biol. Chem., 2018)

DrugR+: A comprehensive relational database for drug repurposing, combination therapy, and replacement therapy. - Yosef Masoudi-Sobhanzadeh; Yadollah Omidi; Massoud Amanlou; Ali Masoudi-Nejad (Comput. Biol. Medicine, 2019)

Structure-based drug repurposing against COVID-19 and emerging infectious diseases: methods, resources and discoveries. - Yosef Masoudi-Sobhanzadeh; Aysan Salemi; Mohammad M. Pourseif; Behzad Jafari; Yadollah Omidi; Ali Masoudi-Nejad (Briefings Bioinform., 2021)

Size-dependent thermo-mechanical vibration of lipid supramolecular nano-tubules via nonlocal strain gradient Timoshenko beam theory. - Babak Alizadeh-Hamidi; Reza Hassannejad; Yadollah Omidi (Comput. Biol. Medicine, 2021)

A novel multi-objective metaheuristic algorithm for protein-peptide docking and benchmarking on the LEADS-PEP dataset. - Yosef Masoudi-Sobhanzadeh; Behzad Jafari; Sepideh Parvizpour; Mohammad M. Pourseif; Yadollah Omidi (Comput. Biol. Medicine, 2021)

Pharmacoinformatics-based phytochemical screening for anticancer impacts of yellow sweet clover, Melilotus officinalis (Linn.) Pall. - Sepideh Parvizpour; Yosef Masoudi-Sobhanzadeh; Mohammad M. Pourseif; Abolfazl Barzegari; Jafar Razmara; Yadollah Omidi (Comput. Biol. Medicine, 2021)

A review of machine learning approaches for drug synergy prediction in cancer. - Anna Torkamannia; Yadollah Omidi; Reza Ferdousi (Briefings Bioinform., 2022)

Multi-dimensional modeling of nanoparticles transportation from capillary bed into the tumor microenvironment. - Sina Jafari-Matanagh; Seyed Esmail Razavi; Mir Biuk Ehghaghi Bonab; Hossein Omidian; Yadollah Omidi (Comput. Biol. Medicine, 2023)

Deciphering anti-biofilm property of Arthrospira platensis-origin peptides against Staphylococcus aureus. - Yosef Masoudi-Sobhanzadeh; Mohammad M. Pourseif; Ava Khalili-Sani; Behzad Jafari; Aysan Salemi; Yadollah Omidi (Comput. Biol. Medicine, 2023)

A voting-based machine learning approach for classifying biological and clinical datasets. - Negar Hossein-Nezhad Daneshvar; Yosef Masoudi-Sobhanzadeh; Yadollah Omidi (BMC Bioinform., 2023)