Modeling allele-specific expression at the gene and SNP levels simultaneously by a Bayesian logistic mixed regression model. - Jing Xie 008; Tieming Ji; Marco A. R. Ferreira; Yahan Li; Bhaumik N. Patel; Rocio M. Rivera (BMC Bioinform., 2019)

idenLD-AREL: identifying lncRNA-disease associations by random forests based on an ensemble learning framework. - Yahan Li; Mingrui Zhang; Junliang Shang; Yaxuan Zhang; Feng Li 033; Jin-Xing Liu 001 (BIBM, 2023)

ABCAE: Artificial Bee Colony Algorithm with Adaptive Exploitation for Epistatic Interaction Detection. - Qianqian Ren; Yahan Li; Feng Li 033; Jin-Xing Liu 001; Junliang Shang (ISBRA, 2023)

LSNSCDA: Unraveling CircRNA-Drug Sensitivity via Local Smoothing Graph Neural Network and Credible Negative Samples. - Ziyu Fan; Yuanpeng Zhang; Yahan Li; Zeyu Zhong; Lei Deng 002 (BIBM, 2024)

A Particle Swarm Optimization Algorithm Based on Multi-Population Mutual Learning for SNP-SNP Interaction Detection. - Linqian Zhao; Yahan Li; Junliang Shang; Qianqian Ren; Yuanyuan Zhang 008; Jin-Xing Liu 001 (BIBM, 2024)

CPSORCL: A Cooperative Particle Swarm Optimization Method with Random Contrastive Learning for Interactive Feature Selection. - Junliang Shang; Yahan Li; Xiaohan Zhang; Feng Li 033; Yuanyuan Zhang 008; Jin-Xing Liu 001 (ISBRA (2), 2024)

Are Clinical T5 Models Better for Clinical Text? - Yahan Li; Keith Harrigian; Ayah Zirikly; Mark Dredze (ML4H@NeurIPS, 2024)

Vision Transformer-based Adversarial Domain Adaptation. - Yahan Li; Yuan Wu 002 (CoRR, 2024)

XTRUST: On the Multilingual Trustworthiness of Large Language Models. - Yahan Li; Yi Wang; Yi Chang 001; Yuan Wu 002 (CoRR, 2024)

Large Language Model Evaluation via Matrix Nuclear-Norm. - Yahan Li; Tingyu Xia; Yi Chang 001; Yuan Wu 002 (CoRR, 2024)

SimHOEPI: A resampling simulator for generating single nucleotide polymorphism data with a high-order epistasis model. - Yahan Li; Xinrui Cai; Junliang Shang; Yuanyuan Zhang 008; Jin-Xing Liu 001 (Quant. Biol., 2024)

Selective fine-tuning for large language models via matrix nuclear norm. - Tingyu Xia; Yahan Li; Yuan Wu 002; Yi Chang 001 (Inf. Process. Manag., 2025)

CounselBench: A Large-Scale Expert Evaluation and Adversarial Benchmark of Large Language Models in Mental Health Counseling. - Yahan Li; Jifan Yao; John Bosco S. Bunyi; Adam C. Frank; Angel Hwang; Ruishan Liu (CoRR, 2025)