ChEA2: Gene-Set Libraries from ChIP-X Experiments to Decode the Transcription Regulome. - Yan Kou; Edward Y. Chen; Neil R. Clark; Qiaonan Duan; Christopher M. Tan; Avi Ma'ayan (CD-ARES, 2013)

ESCAPE: database for integrating high-content published data collected from human and mouse embryonic stem cells. - Huilei Xu; Caroline Baroukh; Ruth Dannenfelser; Edward Y. Chen; Christopher M. Tan; Yan Kou; Yujin E. Kim; Ihor Lemischka; Avi Ma'ayan (Database J. Biol. Databases Curation, 2013)

Enrichr: interactive and collaborative HTML5 gene list enrichment analysis tool. - Edward Y. Chen; Christopher M. Tan; Yan Kou; Qiaonan Duan; Zichen Wang 002; Gabriela Vaz Meirelles; Neil R. Clark; Avi Ma'ayan (BMC Bioinform., 2013)

The characteristic direction: a geometrical approach to identify differentially expressed genes. - Neil R. Clark; Kevin S. Hu; Axel S. Feldmann; Yan Kou; Edward Y. Chen; Qiaonan Duan; Avi Ma'ayan (BMC Bioinform., 2014)

GEO2Enrichr: browser extension and server app to extract gene sets from GEO and analyze them for biological functions. - Gregory W. Gundersen; Matthew R. Jones; Andrew D. Rouillard; Yan Kou; Caroline D. Monteiro; Axel S. Feldmann; Kevin S. Hu; Avi Ma'ayan (Bioinform., 2015)

Partial order relation-based gene ontology embedding improves protein function prediction. - Wenjing Li; Bin Wang; Jin Dai; Yan Kou; Xiaojun Chen; Yi Pan; Shuangwei Hu; Zhenjiang Zech Xu (Briefings Bioinform., 2024)

Wan: Open and Advanced Large-Scale Video Generative Models. - Ang Wang; Baole Ai; Bin Wen; Chaojie Mao; Chen-Wei Xie; Di Chen; Feiwu Yu; Haiming Zhao; Jianxiao Yang; Jianyuan Zeng; Jiayu Wang; Jingfeng Zhang; et al. (CoRR, 2025)