SWGDT: A sliding window-based genotype dependence testing tool for genome-wide susceptibility gene scan. - Yan Wen 003; Jingcan Hao; Xiong Guo; Xiao Xiao; Cuiyan Wu; Sen Wang; Tielin Yang; Hui Shen 007; Xiangding Chen; Lijun Tan; Qing Tian 004; Hong-Wen Deng; et al. (J. Biomed. Informatics, 2015)

CPAS: A trans-omics pathway analysis tool for jointly analyzing DNA copy number variations and mRNA expression profiles data. - Feng Zhang; Xiao Xiao; Jingcan Hao; Sen Wang; Yan Wen 003; Xiong Guo (J. Biomed. Informatics, 2015)

PAPA: a flexible tool for identifying pleiotropic pathways using genome-wide association study summaries. - Yan Wen 003; Wenyu Wang; Xiong Guo; Feng Zhang 034 (Bioinform., 2016)

Tissue-specific pathway association analysis using genome-wide association study summaries. - Wenyu Wang; Jingcan Hao; Shuyu Zheng; Qianrui Fan; Awen He; Yan Wen 003; Xiong Guo; Cuiyan Wu; Sen Wang; Tielin Yang; Hui Shen 007; Xiangding Chen; et al. (Bioinform., 2017)

GWAS summary-based pathway analysis correcting for the genetic confounding impact of environmental exposures. - Qianrui Fan; Feng Zhang 034; Wenyu Wang; Jiawen Xu; Jingcan Hao; Awen He; Yan Wen 003; Ping Li; Xiao Liang; Yanan Du; Li Liu; Cuiyan Wu; et al. (Briefings Bioinform., 2018)

PCA-based GRS analysis enhances the effectiveness for genetic correlation detection. - Yan Zhao; Yujie Ning; Feng Zhang 044; Miao Ding; Yan Wen 003; Liang Shi; Kunpeng Wang; Mengnan Lu; Jingyan Sun; Menglu Wu; Bolun Cheng; Mei Ma; et al. (Briefings Bioinform., 2019)

Identifying psychiatric disorder-associated gut microbiota using microbiota-related gene set enrichment analysis. - Shiqiang Cheng; Bei Han; Miao Ding; Yan Wen 003; Mei Ma; Lu Zhang; Xin Qi 015; Bolun Cheng; Ping Li; Om Prakash Kafle; Xiao Liang; Li Liu; et al. (Briefings Bioinform., 2020)

Enhanced polygenic risk score incorporating gene-environment interaction suggests the association of major depressive disorder with cardiac and lung function. - Chuyu Pan; Bolun Cheng; Xiaoyue Qin; Shiqiang Cheng; Li Liu; Xuena Yang; Peilin Meng; Na Zhang; Dan He; Qingqing Cai; Wenming Wei; Jingni Hui; et al. (Briefings Bioinform., 2024)