An Improved Graph Entropy-based Method for Identifying Protein Complexes. - Bolin Chen; Yan Yan 029; Jin-Hong Shi; Shenggui Zhang; Fang-Xiang Wu (BIBM, 2011)

A multi-edge graph based de novo peptide sequencing method for HCD spectra. - Yan Yan 029; Anthony J. Kusalik; Fang-Xiang Wu (BIBM, 2013)

NovoPair: De novo peptide sequencing for tandem mass spectra pair. - Yan Yan 029; Anthony J. Kusalik; Fang-Xiang Wu (BIBM, 2014)

NovoGMET: De Novo Peptide Sequencing Using Graphs with Multiple Edge Types (GMET) for ETD/ECD Spectra. - Yan Yan 029; Anthony J. Kusalik; Fang-Xiang Wu (ISBRA, 2014)

NovoExD: De novo Peptide Sequencing for ETD/ECD Spectra. - Yan Yan 029; Anthony J. Kusalik; Fang-Xiang Wu (IEEE ACM Trans. Comput. Biol. Bioinform., 2017)

Comparing Four Genome-Wide Association Study (GWAS) Programs with Varied Input Data Quantity. - Yan Yan 029; Connor Burbridge; Jin-Hong Shi; Juxin Liu; Anthony J. Kusalik (BIBM, 2018)

Antimicrobial resistance genetic factor identification from whole-genome sequence data using deep feature selection. - Jin-Hong Shi; Yan Yan 029; Matthew G. Links; Longhai Li; Jo-Anne R. Dillon; Michael Horsch; Anthony J. Kusalik (BMC Bioinform., 2019)

Effects of input data quantity on genome-wide association studies (GWAS). - Yan Yan 029; Connor Burbridge; Jin-Hong Shi; Juxin Liu; Anthony J. Kusalik (Int. J. Data Min. Bioinform., 2019)