Create and assess protein networks through molecular characteristics of individual proteins. - Yanay Ofran; Guy Yachdav; Eyal Mozes; Ta-tsen Soong; Rajesh Nair; Burkhard Rost (ISMB (Supplement of Bioinformatics), 2006)

Session Introduction. - Maricel G. Kann; Yanay Ofran; Marco Punta; Predrag Radivojac (Pacific Symposium on Biocomputing, 2006)

Epitome: database of structure-inferred antigenic epitopes. - Avner Schlessinger; Yanay Ofran; Guy Yachdav; Burkhard Rost (Nucleic Acids Res., 2006)

Prediction of DNA-binding residues from sequence. - Yanay Ofran; Venkatesh Mysore; Burkhard Rost (ISMB/ECCB (Supplement of Bioinformatics), 2007)

ISIS: interaction sites identified from sequence. - Yanay Ofran; Burkhard Rost (Bioinform., 2007)

Protein-Protein Interaction Hotspots Carved into Sequences. - Yanay Ofran; Burkhard Rost (PLoS Comput. Biol., 2007)

Session Introduction. - Yves A. Lussier; Younghee Lee; Predrag Radivojac; Yanay Ofran; Marco Punta; Atul J. Butte; Maricel G. Kann (Pacific Symposium on Biocomputing, 2008)

The Rough Guide to In Silico Function Prediction, or How To Use Sequence and Structure Information To Predict Protein Function. - Marco Punta; Yanay Ofran (PLoS Comput. Biol., 2008)

Session Introduction. - Yves A. Lussier; Younghee Lee; Predrag Radivojac; Yanay Ofran; Atul J. Butte; Maricel G. Kann (Pacific Symposium on Biocomputing, 2009)

Assessing the relationship between conservation of function and conservation of sequence using photosynthetic proteins. - Shaul Ashkenazi; Rotem Snir; Yanay Ofran (Bioinform., 2012)

Static network structure can be used to model the phenotypic effects of perturbations in regulatory networks. - Ariel Feiglin; Adar Hacohen; Avital Sarusi; Jasmin Fisher; Ron Unger; Yanay Ofran (Bioinform., 2012)

Paratome: an online tool for systematic identification of antigen-binding regions in antibodies based on sequence or structure. - Vered Kunik; Shaul Ashkenazi; Yanay Ofran (Nucleic Acids Res., 2012)

Structural Consensus among Antibodies Defines the Antigen Binding Site. - Vered Kunik; Bjoern Peters; Yanay Ofran (PLoS Comput. Biol., 2012)

Non-local residue-residue contacts in proteins are more conserved than local ones. - Orly Noivirt-Brik; Gershon Hazan; Ron Unger; Yanay Ofran (Bioinform., 2013)

PEASE: predicting B-cell epitopes utilizing antibody sequence. - Inbal Sela-Culang; Shaul Ashkenazi; Bjoern Peters; Yanay Ofran (Bioinform., 2015)

DistilProtBert: a distilled protein language model used to distinguish between real proteins and their randomly shuffled counterparts. - Yaron Geffen; Yanay Ofran; Ron Unger (Bioinform., 2022)