Accurately estimating the length distributions of genomic micro-satellites by tumor purity deconvolution. - Yixuan Wang; Xuanping Zhang; Xiao Xiao; Fei-Ran Zhang; Xinxing Yan; Xuan Feng; Zhongmeng Zhao; Yanfang Guan; Jiayin Wang (BMC Bioinform., 2020)

DELFMUT: duplex sequencing-oriented depth estimation model for stable detection of low-frequency mutations. - Guiying Wu; Mengmeng Song; Ke Wang; Tianyu Cui; Zicong Jiao; Liyan Ji; Xuan Gao; Jiayin Wang; Tao Liu; Xuefeng Xia; Huan Fang 005; Yanfang Guan; et al. (Briefings Bioinform., 2023)

Precise identification of somatic and germline variants in the absence of matched normal samples. - Hui Li; Lu Meng; Hongke Wang; Liang Cui; Heyu Sheng; Peiyan Zhao; Shuo Hong; Xinhua Du; Shi Yan; Yun Xing; Shicheng Feng; Yan Zhang; et al. (Briefings Bioinform., 2024)

THOR: a TMB heterogeneity-adaptive optimization model predicts immunotherapy response using clonal genomic features in group-structured data. - Yixuan Wang; Yanfang Guan; Xin Lai; Yuqian Liu; Zhili Chang; Xiaonan Wang; Quan Wang; Jingjing Liu; Jian Zhao 034; Shuanying Yang; Jiayin Wang; Xiaofeng Song (Briefings Bioinform., 2024)