Using Semantic Association to Extend and Infer Literature-Oriented Relativity Between Terms. - Liang Cheng 006; Jie Li 055; Yang Hu 008; Yue Jiang; Yongzhuang Liu; Yan-Shuo Chu; Zhenxing Wang; Yadong Wang 001 (IEEE ACM Trans. Comput. Biol. Bioinform., 2015)

InfDisSim: A novel method for measuring disease similarity based on information flow. - Yang Hu 008; Meng Zhou 003; Hongbo Shi; Hong Ju; Qinghua Jiang; Liang Cheng 006 (BIBM, 2016)

A novel method to identify pre-microRNA in various species knowledge base. - Tianyi Zhao; Ningyi Zhang; Jun Ren; Peigang Xu; Zhiyan Liu; Liang Cheng 006; Yang Hu 008 (BIBM, 2016)

Identifying diseases-related metabolites based on network. - Lingling Zhao; Tianyi Zhao; Yang Hu 008 (BIBM, 2017)

DisSetSim: an online system for calculating similarity between disease sets. - Yang Hu 008; Lingling Zhao; Zhiyan Liu; Hong Ju; Hongbo Shi; Peigang Xu; Yadong Wang 001; Liang Cheng 006 (J. Biomed. Semant., 2017)

A novel method to identify pre-microRNA in various species knowledge base on various species. - Tianyi Zhao; Ningyi Zhang; Ying Zhang; Jun Ren; Peigang Xu; Zhiyan Liu; Liang Cheng 006; Yang Hu 008 (J. Biomed. Semant., 2017)

DTWscore: differential expression and cell clustering analysis for time-series single-cell RNA-seq data. - Zhuo Wang; Shuilin Jin; Guiyou Liu; Xiurui Zhang; Nan Wang; Deliang Wu; Yang Hu 008; Chiping Zhang; Qinghua Jiang; Li Xu; Yadong Wang 001 (BMC Bioinform., 2017)

WDNfinder: A method for minimum driver node set detection and analysis in directed and weighted biological network. - Yan-Shuo Chu; Zhenxing Wang; Rongjie Wang; Ningyi Zhang; Jie Li 055; Yang Hu 008; Mingxiang Teng; Yadong Wang 001 (J. Bioinform. Comput. Biol., 2017)

A Novel Method for Identifying Alzheimer's Disease-related Proteins. - Yang Hu 008; Jun Zhang 041; Tianyi Zhao; Liang Cheng 006; Tianyi Zang (BIBM, 2018)

BIN1 rs744373 Variant Is Significantly Associated with Alzheimer's Disease in Caucasian but Not East Asian Populations. - Zhifa Han; Tao Wang; Rui Tian; Wenyang Zhou; Pingping Wang; Peng Ren; Jian Zong; Yang Hu 008; Shuilin Jin; Qinghua Jiang (ICIC (1), 2018)

DincRNA: a comprehensive web-based bioinformatics toolkit for exploring disease associations and ncRNA function. - Liang Cheng 006; Yang Hu 008; Jie Sun 021; Meng Zhou 003; Qinghua Jiang (Bioinform., 2018)

Identifying diseases-related metabolites using random walk. - Yang Hu 008; Tianyi Zhao; Ningyi Zhang; Tianyi Zang; Jun Zhang 041; Liang Cheng 006 (BMC Bioinform., 2018)

Disease status affects the association between rs4813620 and the expression of Alzheimer's disease susceptibility gene TRIB3. - Guiyou Liu; Shuilin Jin; Yang Hu 008; Qinghua Jiang (Proc. Natl. Acad. Sci. USA, 2018)

PAGWAS: a manually curated web-based knowledge database of GWAS pathway analysis. - Ningyi Zhang; Yang Hu 008 (BIBM, 2019)

Identification of anticancer peptides based on Random Relevance Vector Machines. - Tianyi Zhao; Cheng Liang; Tianyi Zang; Yang Hu 008 (BIBM, 2019)

BIN1 rs744373 variant shows different association with Alzheimer's disease in Caucasian and Asian populations. - Zhifa Han; Tao Wang; Rui Tian; Wenyang Zhou; Pingping Wang; Peng Ren; Jian Zong; Yang Hu 008; Shuilin Jin; Qinghua Jiang (BMC Bioinform., 2019)

Identifying Alzheimer's disease-related proteins by LRRGD. - Tianyi Zhao; Yang Hu 008; Tianyi Zang; Liang Cheng 006 (BMC Bioinform., 2019)

DeepLGP: a novel deep learning method for prioritizing lncRNA target genes. - Tianyi Zhao; Yang Hu 008; Jiajie Peng; Liang Cheng 006; Pier Luigi Martelli (Bioinform., 2020)

DRACP: a novel method for identification of anticancer peptides. - Tianyi Zhao; Yang Hu 008; Tianyi Zang (BMC Bioinform., 2020)

Differentially Expressed Mutant Genes Reveal Potential Prognostic Markers For Lung Adenocarcinoma. - Yue Liu; Shizheng Qiu; Yang Hu 008; Yadong Wang 001 (BIBM, 2021)

Deep-DRM: a computational method for identifying disease-related metabolites based on graph deep learning approaches. - Tianyi Zhao; Yang Hu 008; Liang Cheng 006 (Briefings Bioinform., 2021)

Identifying drug-target interactions based on graph convolutional network and deep neural network. - Tianyi Zhao; Yang Hu 008; Linda R. Valsdottir; Tianyi Zang; Jiajie Peng (Briefings Bioinform., 2021)

MTOR hypermethylation may associate with the susceptibility and survival of SARS-CoV-2 infections to lung adenocarcinoma patients based on multi-omics data and machine learning. - Yu Guo; Minghao Li; Yang Hu 008; Tianyi Zang (BIBM, 2022)

Identification of the expression, prognostic value and cancer immunity of Gasdermin E based on multi-omics data, machine learning and gene ontology. - Shizheng Qiu; Ying Zhang; Yang Hu 008 (BIBM, 2022)

MHCRoBERTa: pan-specific peptide-MHC class I binding prediction through transfer learning with label-agnostic protein sequences. - Fuxu Wang; Haoyan Wang; Lizhuang Wang; Haoyu Lu; Shizheng Qiu; Tianyi Zang; Xinjun Zhang; Yang Hu 008 (Briefings Bioinform., 2022)

Identification of risk genes and biological pathways influencing myopia via transcriptome association study and biomedical ontology methods. - Shizheng Qiu; Yadong Wang 001; Ying Zhang; Yang Hu 008 (BIBM, 2023)

HNetGO: protein function prediction via heterogeneous network transformer. - Xiaoshuai Zhang; Huannan Guo; Fan Zhang; Xuan Wang; Kaitao Wu; Shizheng Qiu; Bo Liu 023; Yadong Wang 001; Yang Hu 008; Junyi Li (Briefings Bioinform., 2023)

Interpretation of 10 years of Alzheimer's disease genetic findings in the perspective of statistical heterogeneity. - Shan Gao; Tao Wang; Zhifa Han; Yang Hu 008; Ping Zhu; Yanli Xue; Chen Huang; Yan Chen; Guiyou Liu (Briefings Bioinform., 2024)

Genome-wide analysis reveals extensive genetic overlap between childhood phenotypes and later-life type 2 diabetes. - Shizheng Qiu; Yige Sun; Jiahe Guo; Yu Zhang; Yang Hu 008 (Comput. Biol. Medicine, 2024)

METnet: A novel deep learning model predicting MET dysregulation in non-small-cell lung cancer on computed tomography images. - Yige Sun; Jirui Guo; Yang Liu; Nan Wang; Yanwei Xu; Fei Wu; Jianxin Xiao; Yingpu Li; Xinxin Wang; Yang Hu 008; Yang Zhou (Comput. Biol. Medicine, 2024)

DIRMC: a database of immunotherapy-related molecular characteristics. - Yue Liu; Yuhuan Zhou; Xiumei Hu; Wuri Le-Ge; Haoyan Wang; Tao Jiang 021; Junyi Li; Yang Hu 008; Yadong Wang 001 (Database J. Biol. Databases Curation, 2024)