SALSA Project: Parallel Data Mining of GIS, Web, Medical, Physics, Chemical, and Biology Data. - Xiaohong Qiu; Geoffrey C. Fox; Seung-Hee Bae; Jong Youl Choi; Jaliya Ekanayake; Yang Ruan (eScience, 2008)

Applying Twister to Scientific Applications. - Bingjing Zhang; Yang Ruan; Tak-Lon Wu; Judy Qiu; Adam Hughes; Geoffrey C. Fox (CloudCom, 2010)

Hybrid cloud and cluster computing paradigms for life science applications. - Judy Qiu; Jaliya Ekanayake; Thilina Gunarathne; Jong Youl Choi; Seung-Hee Bae; Hui Li; Bingjing Zhang; Tak-Lon Wu; Yang Ruan; Saliya Ekanayake; Adam Hughes; Geoffrey C. Fox (BMC Bioinform., 2010)

DACIDR: deterministic annealed clustering with interpolative dimension reduction using a large collection of 16S rRNA sequences. - Yang Ruan; Saliya Ekanayake; Mina Rho; Haixu Tang; Seung-Hee Bae; Judy Qiu; Geoffrey C. Fox (BCB, 2012)

Improving Resource Utilization in MapReduce. - Zhenhua Guo 004; Geoffrey C. Fox; Mo Zhou; Yang Ruan (CLUSTER, 2012)

Interpolative multidimensional scaling techniques for the identification of clusters in very large sequence sets. - Adam Hughes; Yang Ruan; Saliya Ekanayake; Seung-Hee Bae; Qunfeng Dong; Mina Rho; Judy Qiu; Geoffrey C. Fox (BMC Bioinform., 2012)

A Robust and Scalable Solution for Interpolative Multidimensional Scaling with Weighting. - Yang Ruan; Geoffrey C. Fox (e-Science, 2013)

Integration of Clustering and Multidimensional Scaling to Determine Phylogenetic Trees as Spherical Phylograms Visualized in 3 Dimensions. - Yang Ruan; Geoffrey L. House; Saliya Ekanayake; Ursel Schutte; James D. Bever; Haixu Tang; Geoffrey C. Fox (CCGRID, 2014)

Visualizing the Protein Sequence Universe. - Larissa Stanberry; Roger Higdon; Winston Haynes; Natali Kolker; William Broomall; Saliya Ekanayake; Adam Hughes; Yang Ruan; Judy Qiu; Eugene Kolker; Geoffrey C. Fox (Concurr. Comput. Pract. Exp., 2014)

Harp: Collective Communication on Hadoop. - Bingjing Zhang; Yang Ruan; Judy Qiu (IC2E, 2015)

Discriminative descriptors for object tracking. - Yang Ruan; Zhenzhong Wei (J. Vis. Commun. Image Represent., 2016)

Real-Time Visual Tracking through Fusion Features. - Yang Ruan; Zhenzhong Wei (Sensors, 2016)

ETDs, Research Data and More: The Current Status at Nanyang Technological University Singapore. - Schubert Foo; Xue Zhang 007; Yang Ruan; Su Nee Goh (ICADL, 2018)

Fast and robust template matching with majority neighbour similarity and annulus projection transformation. - Jinxiang Lai; Liang Lei; Kaiyuan Deng; Runming Yan; Yang Ruan; Jinyun Zhou (Pattern Recognit., 2020)

Efficient CNN-LSTM Based Parameter Estimation of Lévy Driven Stochastic Differential Equations. - Shuaiyu Li; Yang Ruan; Changzhou Long; Yuzhong Cheng (ICMLA, 2023)

Identification of telomere-related genes associated with aging-related molecular clusters and the construction of a diagnostic model in Alzheimer's disease based on a bioinformatic analysis. - Yang Ruan; Weichao Lv; Shuaiyu Li; Yuzhong Cheng; Duanyang Wang; Chaofeng Zhang; Kuniyoshi Shimizu (Comput. Biol. Medicine, 2023)

Cost-Effective Modular Design for Grid-Integrated Power Converters. - Yang Ruan; Fernando Rafael (IECON, 2024)

How Can Mobile Social Media Sustain Consumers? Assessing the Dynamic Influences of Differentiated Perceived Interactivity on Attitudes, Belongingness, and Stickiness. - Hua Pang; Yang Ruan; Lei Wang (J. Theor. Appl. Electron. Commer. Res., 2024)

ArtifactsBench: Bridging the Visual-Interactive Gap in LLM Code Generation Evaluation. - Chenchen Zhang; Yuhang Li; Can Xu; Jiaheng Liu; Ao Liu; Shihui Hu; Dengpeng Wu; Guanhua Huang; Kejiao Li; Qi Yi; Ruibin Xiong; Haotian Zhu; et al. (CoRR, 2025)