CoSTA: unsupervised convolutional neural network learning for spatial transcriptomics analysis. - Yang Xu 047; Rachel Patton McCord (BMC Bioinform., 2021)

MACA: marker-based automatic cell-type annotation for single-cell expression data. - Yang Xu 047; Simon J. Baumgart; Christian M. Stegmann; Sikander Hayat (Bioinform., 2022)

SMILE: mutual information learning for integration of single-cell omics data. - Yang Xu 047; Priyojit Das; Rachel Patton McCord (Bioinform., 2022)