MCIBox: a toolkit for single-molecule multi-way chromatin interaction visualization and micro-domains identification. - Simon Zhongyuan Tian; Guoliang Li 002; Duo Ning; Kai Jing; Yewen Xu; Yang Yang 145; Melissa Jane Fullwood; Pengfei Yin; Guangyu Huang; Dariusz Plewczynski; Jixian Zhai; Ziwei Dai; et al. (Briefings Bioinform., 2022)

ScSmOP: a universal computational pipeline for single-cell single-molecule multiomics data analysis. - Kai Jing; Yewen Xu; Yang Yang 145; Pengfei Yin; Duo Ning; Guangyu Huang; Yuqing Deng; Gengzhan Chen; Guoliang Li 002; Simon Zhongyuan Tian; Meizhen Zheng (Briefings Bioinform., 2023)