Tracing the Evolution of Lineage-Specific Transcription Factor Binding Sites in a Birth-Death Framework. - Ken Daigoro Yokoyama; Yang Zhang 042; Jian Ma 004 (PLoS Comput. Biol., 2014)

Predicting CTCF-mediated chromatin loops using CTCF-MP. - Ruochi Zhang; Yuchuan Wang; Yang Yang 094; Yang Zhang 042; Jian Ma 004 (Bioinform., 2018)

ICG: a wiki-driven knowledgebase of internal control genes for RT-qPCR normalization. - Jian Sang; Zhennan Wang; Man Li; Jiabao Cao; Guangyi Niu; Lin Xia; Dong Zou; Fan Wang; Xingjian Xu; Xiaojiao Han; Jinqi Fan; Ye Yang; et al. (Nucleic Acids Res., 2018)

Comparing 3D Genome Organization in Multiple Species Using Phylo-HMRF. - Yang Yang 094; Yang Zhang 042; Bing Ren; Jesse R. Dixon; Jian Ma 004 (RECOMB, 2019)

Plant editosome database: a curated database of RNA editosome in plants. - Man Li; Lin Xia; Yuansheng Zhang; Guangyi Niu; Mengwei Li; Pei Wang; Yang Zhang 042; Jian Sang; Dong Zou; Songnian Hu; Lili Hao; Zhang Zhang 002 (Nucleic Acids Res., 2019)

Editome Disease Knowledgebase (EDK): a curated knowledgebase of editome-disease associations in human. - Guangyi Niu; Dong Zou; Mengwei Li; Yuansheng Zhang; Jian Sang; Lin Xia; Man Li; Lin Liu; Jiabao Cao; Yang Zhang 042; Pei Wang; Songnian Hu; et al. (Nucleic Acids Res., 2019)

Cancer mutational signatures representation by large-scale context embedding. - Yang Zhang 042; Yunxuan Xiao; Muyu Yang; Jian Ma 004 (Bioinform., 2020)

A Survey on Contact Tracing: the Latest Advancements and Challenges. - Ting Jiang; Yizheng Chen 003; Yang Zhang 042; Minhao Zhang; Chenhao Lu; Ji Zhang 001; Zhao Li 007; Jun Gao 003; Shuigeng Zhou (CoRR, 2020)

LSD 3.0: a comprehensive resource for the leaf senescence research community. - Zhonghai Li; Yang Zhang 042; Dong Zou; Yi Zhao 013; Hou-Ling Wang; Yi Zhang; Xinli Xia; Jingchu Luo; Hongwei Guo; Zhang Zhang 002 (Nucleic Acids Res., 2020)

Poly(A)-DG: A deep-learning-based domain generalization method to identify cross-species Poly(A) signal without prior knowledge from target species. - Yumin Zheng; Haohan Wang; Yang Zhang 042; Xin Gao 001; Eric P. Xing; Min Xu 009 (PLoS Comput. Biol., 2020)

Improving Irregularly Sampled Time Series Learning with Time-Aware Dual-Attention Memory-Augmented Networks. - Zhen Wang 037; Yang Zhang 042; Ai Jiang; Ji Zhang 001; Zhao Li 007; Jun Gao 003; Ke Li 044; Chenhao Lu; Zujie Ren (CIKM, 2021)

Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2021. - Yongbiao Xue; Yiming Bao; Zhang Zhang 002; Wenming Zhao; Jing-Fa Xiao; Shunmin He; Guoqing Zhang 006; Yixue Li; Guoping Zhao; Runsheng Chen; Shuhui Song; Lina Ma; et al. (Nucleic Acids Res., 2021)

Hierarchical Aggregation Based Knowledge Graph Embedding for Multi-task Recommendation. - Yani Wang; Ji Zhang 001; Xiangmin Zhou; Yang Zhang 042 (APWeb/WAIM (3), 2022)

Debiased Learning of Self-Labeled Twitter Data for User Demographic Prediction. - Zhen Wang 037; Madison Cooley; Yang Zhang 042; Chao Lan; Ji Zhang 001 (IEEE Big Data, 2022)

IDGMS: a One-Stop Graph Mining System for Infectious Diseases. - Zenghui Xu; Ting Yu 004; Xingyun Hong; Mingzhang Li; Yang Zhang 042; Zujie Ren; Ji Zhang 001 (IEEE Big Data, 2022)

Knowledge Tracing Based on Gated Heterogeneous Graph Convolutional Networks. - Yang Zhang 042; Zhen Wang 037; Ting Yu 004; Mingming Lu; Zujie Ren; Ji Zhang 001 (IEEE Big Data, 2022)

Concert: Genome-Wide Prediction of Sequence Elements That Modulate DNA Replication Timing. - Yang Yang 094; Yuchuan Wang; Yang Zhang 042; Jian Ma 004 (RECOMB, 2022)

BrainBase: a curated knowledgebase for brain diseases. - Lin Liu; Yang Zhang 042; Guangyi Niu; Qianpeng Li; Zhao Li 008; Tongtong Zhu; Changrui Feng; Xiaonan Liu; Yuansheng Zhang; Tianyi Xu; Ruru Chen; Xufei Teng; et al. (Nucleic Acids Res., 2022)

Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2022. - Yongbiao Xue; Yiming Bao; Zhang Zhang 002; Wenming Zhao; Jing-Fa Xiao; Shunmin He; Guoqing Zhang 006; Yixue Li; Guoping Zhao; Runsheng Chen; Jingyao Zeng; Yadong Zhang; et al. (Nucleic Acids Res., 2022)

A Survey on Contact Tracing: The Latest Advancements and Challenges. - Ting Jiang; Yang Zhang 042; Minhao Zhang; Ting Yu 004; Yizheng Chen 003; Chenhao Lu; Ji Zhang 001; Zhao Li 007; Jun Gao 003; Shuigeng Zhou (ACM Trans. Spatial Algorithms Syst., 2022)

Identify Non-mutational p53 Functional Deficiency in Human Cancers. - Qianpeng Li; Yang Zhang 042; Sicheng Luo; Zhang Zhang 002; Ann L. Oberg; David E. Kozono; Hua Lu 019; Jann N. Sarkaria; Lina Ma; Liguo Wang 002 (Genom. Proteom. Bioinform., 2024)

Methodology and real-world applications of dynamic uncertain causality graph for clinical diagnosis with explainability and invariance. - Zhang Zhang 002; Qin Zhang 007; Yang Jiao; Lin Lu; Lin Ma; Aihua Liu; Xiao Liu; Juan Zhao; Yajun Xue; Bing Wei; Mingxia Zhang; Ru Gao; et al. (Artif. Intell. Rev., 2024)

Attribute Diversity Aware Community Detection on Attributed Graphs Using Three-View Graph Attention Neural Networks. - Yang Zhang 042; Ting Yu 004; Shengqiang Chi; Zhen Wang 037; Yue Gao 002; Ji Zhang 001; Tianshu Zhou (ACM Trans. Knowl. Discov. Data, 2024)

Toward Learning Joint Inference Tasks for IASS-MTS Using Dual Attention Memory With Stochastic Generative Imputation. - Zhen Wang 037; Yang Zhang 042; Yan Pang; Nannan Wang 001; Mohamed Jaward Bah; Ke Li 044; Ji Zhang 001 (IEEE Trans. Neural Networks Learn. Syst., 2024)