Integer programming-based method for grammar-based tree compression and its application to pattern extraction of glycan tree structures. - Yang Zhao 018; Morihiro Hayashida; Tatsuya Akutsu (BMC Bioinform., 2010)

Integer Programming-Based Approach to Attractor Detection and Control of Boolean Networks. - Tatsuya Akutsu; Yang Zhao 018; Morihiro Hayashida; Takeyuki Tamura (IEICE Trans. Inf. Syst., 2012)

Protein complex prediction via improved verification methods using constrained domain-domain matching. - Yang Zhao 018; Morihiro Hayashida; Jose C. Nacher; Hiroshi Nagamochi; Tatsuya Akutsu (Int. J. Bioinform. Res. Appl., 2012)

Flux balance impact degree: a new definition of impact degree to properly treat reversible reactions in metabolic networks. - Yang Zhao 018; Takeyuki Tamura; Tatsuya Akutsu; Jean-Philippe Vert (Bioinform., 2013)

Breadth-First Search Approach to Enumeration of Tree-like Chemical Compounds. - Yang Zhao 018; Morihiro Hayashida; Jira Jindalertudomdee; Hiroshi Nagamochi; Tatsuya Akutsu (J. Bioinform. Comput. Biol., 2013)

Computational Methods for Analyzing Chemical Graphs and Biological Networks. - Yang Zhao 018 (2014)

Grammar-based compression approach to extraction of common rules among multiple trees of glycans and RNAs. - Yang Zhao 018; Morihiro Hayashida; Yue Cao; Jaewook Hwang; Tatsuya Akutsu (BMC Bioinform., 2015)

Enumeration method for tree-like chemical compounds with benzene rings and naphthalene rings by breadth-first search order. - Jira Jindalertudomdee; Morihiro Hayashida; Yang Zhao 018; Tatsuya Akutsu (BMC Bioinform., 2016)