PerM: efficient mapping of short sequencing reads with periodic full sensitive spaced seeds. - Yangho Chen; Tade Souaiaia; Ting Chen (Bioinform., 2009)

RseqFlow: workflows for RNA-Seq data analysis. - Ying Wang; Gaurang Mehta; Rajiv Mayani; Jingxi Lu; Tade Souaiaia; Yangho Chen; Andrew P. Clark; Hee Jae Yoon; Lin Wan; Oleg V. Evgrafov; James A. Knowles; Ewa Deelman; et al. (Bioinform., 2011)

TSKANMixer: Kolmogorov-Arnold Networks with MLP-Mixer Model for Time Series Forecasting. - Young-Chae Hong; Bei Xiao; Yangho Chen (CoRR, 2025)