Statistical significance for hierarchical clustering in genetic association and microarray expression studies. - Mark A. Levenstien; Yaning Yang; Jürg Ott (BMC Bioinform., 2003)

Statistical Methods for Analyzing Microarray Feature Data with Replications. - Yaning Yang; Josephine Hoh; Clemens Broger; Martin Neeb; Joanne Edington; Klaus Lindpaintner; Jürg Ott (J. Comput. Biol., 2003)

Survival analysis of microarray expression data by transformation models. - Jinfeng Xu 001; Yaning Yang; Jürg Ott (Comput. Biol. Chem., 2005)

A parsimonious threshold-independent protein feature selection method through the area under receiver operating characteristic curve. - Zhanfeng Wang; Yuan-chin Ivan Chang; Zhiliang Ying; Liang Zhu; Yaning Yang (Bioinform., 2007)

Comparison of Goodness-of-Fit Measures in Probit Regression Model. - Berna Yazici; Özlem Alpu; Yaning Yang (Commun. Stat. Simul. Comput., 2007)

PoooL: an efficient method for estimating haplotype frequencies from large DNA pools. - Han Zhang 003; Hsin-Chou Yang; Yaning Yang (Bioinform., 2008)

Exploring case-control genetic association tests using phase diagrams. - Wentian Li; Young Ju Suh; Yaning Yang (Comput. Biol. Chem., 2008)

Fractal Characterizations of Max Statistical Distribution in Genetic Association Studies. - Wentian Li; Yaning Yang (Adv. Complex Syst., 2009)

Computationally feasible estimation of haplotype frequencies from pooled DNA with and without Hardy-Weinberg equilibrium. - Anthony Y. C. Kuk; Han Zhang 003; Yaning Yang (Bioinform., 2009)

Partial correlation analysis indicates causal relationships between GC-content, exon density and recombination rate in the human genome. - Jan Freudenberg; Mingyi Wang; Yaning Yang; Wentian Li (BMC Bioinform., 2009)

Testing multiple gene interactions by the ordered combinatorial partitioning method in case-control studies. - Xing Hua; Han Zhang 003; Hong Zhang; Yaning Yang; Anthony Y. C. Kuk (Bioinform., 2010)

A study of the efficiency of pooling in haplotype estimation. - Anthony Y. C. Kuk; Jinfeng Xu 001; Yaning Yang (Bioinform., 2010)

Research and Design of Direct Type Automobile Tire Burst Early-Warning System. - Min Li; Jiyin Zhao; Xingwen Chen; Yaning Yang (CSEE (2), 2011)

Computer-aided design of lead compensator of control system via MATLAB. - Yanqiu Cui; Yaning Yang; Tao Zhang (EMEIT, 2011)

Effective sample size: Quick estimation of the effect of related samples in genetic case-control association analyses. - Yaning Yang; Elaine F. Remmers; Chukwuma B. Ogunwole; Daniel L. Kastner; Peter K. Gregersen; Wentian Li (Comput. Biol. Chem., 2011)

ECG acquisition circuit design based on C8051F330. - Baochun Wu; Min Li; Yaning Yang; Weiwei Zhang (BHI, 2012)

Rare variants analysis by risk-based variable-threshold method. - Hongyan Fang; Bo Hou; Qi Wang; Yaning Yang (Comput. Biol. Chem., 2013)

Using volcano plots and regularized-chi statistics in genetic association studies. - Wentian Li; Jan Freudenberg; Young Ju Suh; Yaning Yang (Comput. Biol. Chem., 2014)

Application of t-SNE to human genetic data. - Wentian Li; Jane E. Cerise; Yaning Yang; Henry Han (J. Bioinform. Comput. Biol., 2017)

Evaluation of accuracy of automatic out-of-plane respiratory gating for DCEUS-based quantification using principal component analysis. - Diya Wang; Zhe Su; Qiang Su; Xinyu Zhang; Zhen Qu; Na Wang; Yujin Zong; Yaning Yang; Mingxi Wan (Comput. Medical Imaging Graph., 2018)

Reliability assessment of system under a generalized run shock model. - Ming Gong; Min Xie 001; Yaning Yang (J. Appl. Probab., 2018)

A General Fine-tuned Transfer Learning Model for Predicting Clinical Task Acrossing Diverse EHRs Datasets. - Zhe Sun; Shaoliang Peng; Yaning Yang; Xiaoqi Wang; Fei Li 040 (BIBM, 2019)

CSHAP: efficient haplotype frequency estimation based on sparse representation. - Yinsheng Zhou; Han Zhang 003; Yaning Yang (Bioinform., 2019)

Efficiently recognition of vaginal micro-ecological environment based on Convolutional Neural Network. - Shaoliang Peng; Hao Huang; Minxia Cheng; Yaning Yang; Fei Li 040 (HealthCom, 2020)

A deep metric learning algorithm for similarity measure of the gene expression profile. - Shaoliang Peng; Lei Zhang; Yaning Yang; Wei Liu; Fei Li 040; Hao Hong; Kenli Li 001; Shulin Wang (HealthCom, 2020)

A Dynamic Protection Mechanism for GPU Memory Overflow. - Yaning Yang; Xiaoqi Wang; Shaoliang Peng (NPC, 2020)

High-throughput and efficient multilocus genome-wide association study on longitudinal outcomes. - Huang Xu 005; Xiang Li; Yaning Yang; Yi Li; Jose Pinheiro; Kate Sasser; Hisham Hamadeh; Xu Steven 001; Min Yuan (Bioinform., 2020)

Adaptive weighted sum tests via LASSO method in multi-locus family-based association analysis. - Rui Liu; Min Yuan; Huang Xu 005; Pinzhong Chen; Xu Steven Xu; Yaning Yang (Comput. Biol. Chem., 2020)

ParaPindel: a scalable coordinated parallel detection framework for human genome-wide structural variation. - Yaning Yang; Xiaoqi Wang; Ying Xu; Chao Yang 015; Bin Jiang 006; Shaoliang Peng (BIBM, 2021)

CFCN: A Multi-scale Fully Convolutional Network with Dilated Convolution for Nuclei Classification and Localization. - Bin Xin; Yaning Yang; Dongqing Wei; Shaoliang Peng (ISBRA, 2021)

SCEBE: an efficient and scalable algorithm for genome-wide association studies on longitudinal outcomes with mixed-effects modeling. - Min Yuan; Xu Steven Xu; Yaning Yang; Yinsheng Zhou; Yi Li; Jinfeng Xu 001; Jose Pinheiro (Briefings Bioinform., 2021)

BioERP: biomedical heterogeneous network-based self-supervised representation learning approach for entity relationship predictions. - Xiaoqi Wang; Yaning Yang; Kenli Li 001; Wentao Li; Fei Li 040; Shaoliang Peng (Bioinform., 2021)

Beyond standard pipeline and p . - Wentian Li; Andrew Shih; Yun Freudenberg-Hua; Wen Fury; Yaning Yang (Comput. Biol. Chem., 2021)

Discriminant Projection Shared Dictionary Learning for Classification of Tumors Using Gene Expression Data. - Shaoliang Peng; Yaning Yang; Wei Liu; Fei Li 040; Xiangke Liao (IEEE ACM Trans. Comput. Biol. Bioinform., 2021)

MSVF: Multi-task Structure Variation Filter with Transfer Learning in High-throughput Sequencing. - Weiming Xiang 003; Yingbo Cui 001; Yaning Yang; Ang Zhang; Boya Ji; Shaoliang Peng (BIBM, 2022)

SVPath: an accurate pipeline for predicting the pathogenicity of human exon structural variants. - Yaning Yang; Xiaoqi Wang; Deshan Zhou; Dong-Qing Wei; Shaoliang Peng (Briefings Bioinform., 2022)

Bias correction for multiple covariate analysis using empirical bayesian estimation in mixed-effects models for longitudinal data. - Yi Li; Yaning Yang; Xu Steven Xu; Min Yuan; Alzheimer's Disease Neuroimaging Initiative (Comput. Biol. Chem., 2022)

Multi-task Joint Strategies of Self-supervised Representation Learning on Biomedical Networks for Drug Discovery. - Xiaoqi Wang; Yingjie Cheng; Yaning Yang; Fei Li 040; Shaoliang Peng (CoRR, 2022)

Detecting and Classifying Nuclei Using Multi-Scale Fully Convolutional Network. - Bin Xin; Yaning Yang; Xiaolan Xie; Jiandong Shang; Zhengyu Liu; Shaoliang Peng (J. Comput. Biol., 2022)

Brief Industry Paper: RTLight: Digital Twin-Based Real-Time Federated Traffic Signal Control. - Yutong Ye 001; Zhiwei Ling; Yaning Yang; Xian Wei; Cheng Chen 027; Su Chen; Mingsong Chen 001 (RTSS, 2023)

CPGL: Prediction of Compound-Protein Interaction by Integrating Graph Attention Network With Long Short-Term Memory Neural Network. - Minghua Zhao; Min Yuan; Yaning Yang; Steven X. Xu 001 (IEEE ACM Trans. Comput. Biol. Bioinform., 2023)

Multitask joint strategies of self-supervised representation learning on biomedical networks for drug discovery. - Xiaoqi Wang; Yingjie Cheng; Yaning Yang; Yue Yu 001; Fei Li 040; Shaoliang Peng (Nat. Mac. Intell., 2023)

GGNpTCR: A Generative Graph Structure Neural Network for Predicting Immunogenic Peptides for T-cell Immune Response. - Minghua Zhao; Steven X. Xu 001; Yaning Yang; Min Yuan (J. Chem. Inf. Model., 2023)

Situation-Dependent Causal Influence-Based Cooperative Multi-Agent Reinforcement Learning. - Xiao Du; Yutong Ye 001; Pengyu Zhang; Yaning Yang; Mingsong Chen 001; Ting Wang 001 (AAAI, 2024)

TranSVPath: A TabTransformer-Based Model for Predicting the Pathogenicity of Structural Variants. - Yaning Yang; Jiawei Wang; Xiaoqi Wang; Liwen Xu; Liangrui Pan; Shaoliang Peng (BIBM, 2024)

MESBC: A novel mutually exclusive spectral biclustering method for cancer subtyping. - Fengrong Liu; Yaning Yang; Xu Steven Xu; Min Yuan (Comput. Biol. Chem., 2024)

A hierarchical attention network integrating multi-scale relationship for drug response prediction. - Xiaoqi Wang; Yuqi Wen; Yixin Zhang; Chong Dai; Yaning Yang; Xiaochen Bo; Song He; Shaoliang Peng (Inf. Fusion, 2024)

Enhanced NO2 Gas Sensing Properties Based on Rb-Doped ZnO/In2O3 Heterojunctions at Room Temperature: A Combined DFT and Experimental Study. - Yaning Yang; Jiawen Cui; Zhihua Luo; Zhixin Luo; Yanhui Sun (Sensors, 2024)

Discovery of mutations predictive of survival benefit from immunotherapy in first-line NSCLC: A retrospective machine learning study of IMpower150 liquid biopsy data. - Min Yuan; Wei Feng; Haolun Ding; Yaning Yang; Xu Steven Xu (Comput. Biol. Medicine, 2025)

Multi-Objective Deep Reinforcement Learning for Function Offloading in Serverless Edge Computing. - Yaning Yang; Xiao Du; Yutong Ye 001; Jiepin Ding; Ting Wang 001; Mingsong Chen 001; Keqin Li 001 (IEEE Trans. Serv. Comput., 2025)

Energy-Efficient Shop Scheduling Using Space-Cooperation Multi-Objective Optimization. - Jiepin Ding; Jun Xia 003; Yaning Yang; Junlong Zhou; Mingsong Chen 001; Keqin Li 001 (IEEE Trans. Sustain. Comput., 2025)

STAMP: Multi-pattern Attention-aware Multiple Instance Learning for STAS Diagnosis in Multi-center Histopathology Images. - Liangrui Pan; xiaoyu Li; Guang Zhu; Guanting Li; Ruixin Wang; Jiadi Luo; Yaning Yang; Qingchun Liang; Shaoliang Peng (CoRR, 2025)

Parallel Acceleration of Genome Variation Detection on Multi-Zone Heterogeneous System. - Yaning Yang; Xiaoqi Wang; Chengqing Li; Shaoliang Peng (IEEE Trans. Parallel Distributed Syst., 2025)