Structural Protein Interactions Predict Kinase-Inhibitor Interactions in Upregulated Pancreas Tumour Genes Expression Data. - Gihan Dawelbait; Christian Pilarsky; Yanju Zhang; Robert Grützmann; Michael Schroeder 001 (CompLife, 2005)

Structural templates predict novel protein interactions and targets from pancreas tumour gene expression data. - Gihan Dawelbait; Christof Winter; Yanju Zhang; Christian Pilarsky; Robert Grützmann; Jörg-Christian Heinrich; Michael Schroeder 001 (ISMB/ECCB (Supplement of Bioinformatics), 2007)

miRNA target prediction through mining of miRNA relationships. - Yanju Zhang; Jeroen S. de Bruin; Fons J. Verbeek (BIBE, 2008)

Comparison and Integration of Target Prediction Algorithms for microRNA Studies. - Yanju Zhang; Fons J. Verbeek (J. Integr. Bioinform., 2010)

Identification of Common Carp Innate Immune Genes with Whole-Genome Sequencing and RNA-Seq Data. - Yanju Zhang; Elia Stupka; Christiaan V. Henkel; Hans J. Jansen; Herman P. Spaink; Fons J. Verbeek (J. Integr. Bioinform., 2011)

PASSion: a pattern growth algorithm-based pipeline for splice junction detection in paired-end RNA-Seq data. - Yanju Zhang; Eric-Wubbo Lameijer; Peter A. C. 't Hoen; Zemin Ning; P. Eline Slagboom; Kai Ye 001 (Bioinform., 2012)

Bastion6: a bioinformatics approach for accurate prediction of type VI secreted effectors. - Jiawei Wang 002; Bingjiao Yang; André Leier; Tatiana T. Marquez-Lago; Morihiro Hayashida; Andrea Rocker; Yanju Zhang; Tatsuya Akutsu; Kuo-Chen Chou; Richard A. Strugnell; Jiangning Song; Trevor Lithgow (Bioinform., 2018)

Computational analysis and prediction of lysine malonylation sites by exploiting informative features in an integrative machine-learning framework. - Yanju Zhang; Ruopeng Xie; Jiawei Wang 002; André Leier; Tatiana T. Marquez-Lago; Tatsuya Akutsu; Geoffrey I. Webb; Kuo-Chen Chou; Jiangning Song (Briefings Bioinform., 2019)

Bastion3: a two-layer ensemble predictor of type III secreted effectors. - Jiawei Wang 002; Jiahui Li 007; Bingjiao Yang; Ruopeng Xie; Tatiana T. Marquez-Lago; André Leier; Morihiro Hayashida; Tatsuya Akutsu; Yanju Zhang; Kuo-Chen Chou; Joel Selkrig; Tieli Zhou; et al. (Bioinform., 2019)

Improvement of Collaborative Filtering Recommendation Algorithm Based on Intuitionistic Fuzzy Reasoning Under Missing Data. - Yanju Zhang; Yue Wang; Shiqin Wang (IEEE Access, 2020)

PeNGaRoo, a combined gradient boosting and ensemble learning framework for predicting non-classical secreted proteins. - Yanju Zhang; Sha Yu; Ruopeng Xie; Jiahui Li 007; André Leier; Tatiana T. Marquez-Lago; Tatsuya Akutsu; Alexander Ian Smith; Zongyuan Ge; Jiawei Wang 002; Trevor Lithgow; Jiangning Song (Bioinform., 2020)

PaCRISPR: a server for predicting and visualizing anti-CRISPR proteins. - Jiawei Wang 002; Wei Dai; Jiahui Li 007; Ruopeng Xie; Rhys A. Dunstan; Christopher Stubenrauch; Yanju Zhang; Trevor Lithgow (Nucleic Acids Res., 2020)

DeepVF: a deep learning-based hybrid framework for identifying virulence factors using the stacking strategy. - Ruopeng Xie; Jiahui Li 007; Jiawei Wang 002; Wei Dai; André Leier; Tatiana T. Marquez-Lago; Tatsuya Akutsu; Trevor Lithgow; Jiangning Song; Yanju Zhang (Briefings Bioinform., 2021)

AcrHub: an integrative hub for investigating, predicting and mapping anti-CRISPR proteins. - Jiawei Wang 002; Wei Dai; Jiahui Li 007; Qi Li; Ruopeng Xie; Yanju Zhang; Christopher Stubenrauch; Trevor Lithgow (Nucleic Acids Res., 2021)

BastionHub: a universal platform for integrating and analyzing substrates secreted by Gram-negative bacteria. - Jiawei Wang 002; Jiahui Li 007; Yi Hou; Wei Dai; Ruopeng Xie; Tatiana T. Marquez-Lago; André Leier; Tieli Zhou; Von Torres; Iain Hay; Christopher Stubenrauch; Yanju Zhang; et al. (Nucleic Acids Res., 2021)

Vehicle Violation Detection System Based on Improved YOLOv5 Algorithm. - Xiaohan Sun; Yanju Zhang; Xiaobin Huang; Fangzhou Wang; Zugang Mo (CIS, 2022)

SpliceCannon: A novel framework for the prediction of canonical and non-canonical splice sites based on deep learning. - Yanju Zhang; Wangjing Qi; Ruohan Lin; Jinli Fan (BIBM, 2023)

A Weakly Supervised Semantic Segmentation Method on Lung Adenocarcinoma Histopathology Images. - Xiaobin Lan; Jiaming Mei; Ruohan Lin; Jiahao Chen; Yanju Zhang (ICIC (2), 2023)

SpliceSCANNER: An Accurate and Interpretable Deep Learning-Based Method for Splice Site Prediction. - Rongxing Wang; Junwei Xu; Xiaodi Huang; Wangjing Qi; Yanju Zhang (ICIC (3), 2023)

MATL: A deep neural network using multi-scale convolutions and transformer for transcription factor binding site prediction. - Jinli Fan; Ruyi Shen; Xiaodi Huang; Yanju Zhang (BIBM, 2024)

Accelerating spliced alignment of long RNA sequencing reads using parallel maximal exact match retrieval. - Rongxing Wang; Yanju Zhang (Comput. Biol. Medicine, 2024)