T3DB: a comprehensively annotated database of common toxins and their targets. - Emilia Lim; Allison Pon; Yannick Djoumbou; Craig Knox; Savita Shrivastava; Anchi Guo; Vanessa Neveu; David S. Wishart (Nucleic Acids Res., 2010)

DrugBank 3.0: a comprehensive resource for 'Omics' research on drugs. - Craig Knox; Vivian Law; Timothy Jewison; Philip Liu; Son Ly; Alex Frolkis; Allison Pon; Kelly Banco; Christine Mak; Vanessa Neveu; Yannick Djoumbou; Roman Eisner; et al. (Nucleic Acids Res., 2011)

YMDB: the Yeast Metabolome Database. - Timothy Jewison; Craig Knox; Vanessa Neveu; Yannick Djoumbou; Anchi Guo; Jacqueline Lee; Philip Liu; Rupasri Mandal; Ram Krishnamurthy 002; Igor Sinelnikov; Michael Wilson 002; David S. Wishart (Nucleic Acids Res., 2012)

ECMDB: The E. coli Metabolome Database. - Anchi Guo; Timothy Jewison; Michael Wilson 002; Yifeng Liu 001; Craig Knox; Yannick Djoumbou; Patrick Lo; Rupasri Mandal; Ram Krishnamurthy 002; David S. Wishart (Nucleic Acids Res., 2013)

HMDB 3.0 - The Human Metabolome Database in 2013. - David S. Wishart; Timothy Jewison; Anchi Guo; Michael Wilson 002; Craig Knox; Yifeng Liu 001; Yannick Djoumbou; Rupasri Mandal; Farid Aziat; Edison Dong; Souhaila Bouatra; Igor Sinelnikov; et al. (Nucleic Acids Res., 2013)

SMPDB 2.0: Big Improvements to the Small Molecule Pathway Database. - Timothy Jewison; Yilu Su; Fatemeh Miri Disfany; Yongjie Liang; Craig Knox; Adam Maciejewski; Jenna Poelzer; Jessica Huynh; You Zhou; David Arndt; Yannick Djoumbou; Yifeng Liu 001; et al. (Nucleic Acids Res., 2014)

DrugBank 4.0: shedding new light on drug metabolism. - Vivian Law; Craig Knox; Yannick Djoumbou; Timothy Jewison; Anchi Guo; Yifeng Liu 001; Adam Maciejewski; David Arndt; Michael Wilson 002; Vanessa Neveu; Alexandra Tang; Geraldine Gabriel; et al. (Nucleic Acids Res., 2014)

T3DB: the toxic exposome database. - David S. Wishart; David Arndt; Allison Pon; Tanvir Sajed; Anchi Guo; Yannick Djoumbou; Craig Knox; Michael Wilson 002; Yongjie Liang; Jason R. Grant; Yifeng Liu 001; Seyed Ali Goldansaz; et al. (Nucleic Acids Res., 2015)

ClassyFire: automated chemical classification with a comprehensive, computable taxonomy. - Yannick Djoumbou; Roman Eisner; Craig Knox; Leonid L. Chepelev; Janna Hastings; Gareth I. Owen; Eoin Fahy; Christoph Steinbeck; Shankar Subramanian; Evan Bolton; Russell Greiner; David S. Wishart (J. Cheminformatics, 2016)

ECMDB 2.0: A richer resource for understanding the biochemistry of E. coli. - Tanvir Sajed; Ana Marcu; Miguel Ramirez-Gaona; Allison Pon; An Chi Guo; Craig Knox; Michael Wilson 002; Jason R. Grant; Yannick Djoumbou; David S. Wishart (Nucleic Acids Res., 2016)

YMDB 2.0: a significantly expanded version of the yeast metabolome database. - Miguel Ramirez-Gaona; Ana Marcu; Allison Pon; An Chi Guo; Tanvir Sajed; Noah A. Wishart; Naama Karu; Yannick Djoumbou Feunang; David Arndt; David S. Wishart (Nucleic Acids Res., 2017)

CypReact: A Software Tool for in Silico Reactant Prediction for Human Cytochrome P450 Enzymes. - Siyang Tian; Yannick Djoumbou Feunang; Russell Greiner; David S. Wishart (J. Chem. Inf. Model., 2018)

DrugBank 5.0: a major update to the DrugBank database for 2018. - David S. Wishart; Yannick D. Feunang; An Chi Guo; Elvis J. Lo; Ana Marcu; Jason R. Grant; Tanvir Sajed; Daniel Johnson; Carin Li; Zinat Sayeeda; Nazanin Assempour; Ithayavani Iynkkaran; et al. (Nucleic Acids Res., 2018)

HMDB 4.0: the human metabolome database for 2018. - David S. Wishart; Yannick Djoumbou Feunang; Ana Marcu; An Chi Guo; Kevin Y. H. Liang; Rosa Vázquez-Fresno; Tanvir Sajed; Daniel Johnson; Carin Li; Naama Karu; Zinat Sayeeda; Elvis J. Lo; et al. (Nucleic Acids Res., 2018)

BioTransformer: a comprehensive computational tool for small molecule metabolism prediction and metabolite identification. - Yannick Djoumbou Feunang; Jarlei Fiamoncini; Alberto Gil-de-la-Fuente; Russell Greiner; Claudine Manach; David S. Wishart (J. Cheminformatics, 2019)

Computational Applications in Secondary Metabolite Discovery (CAiSMD): an online workshop. - Fidele Ntie-Kang; Kiran K. Telukunta; Serge A. T. Fobofou; Victor Chukwudi Osamor; Samuel A. Egieyeh; Marilia Valli; Yannick Djoumbou Feunang; Maria Sorokina; Conrad Stork; Neann Mathai; Paul F. Zierep; Ana L. Chávez-Hernández; et al. (J. Cheminformatics, 2021)

BioTransformer 3.0 - a web server for accurately predicting metabolic transformation products. - David S. Wishart; Siyang Tian; Dana Allen; Eponine Oler; Harrison Peters; Vicki W. Lui; Vasuk Gautam; Yannick Djoumbou Feunang; Russell Greiner; Thomas O. Metz (Nucleic Acids Res., 2022)

ChemFOnt: the chemical functional ontology resource. - David S. Wishart; Sagan Girod; Harrison Peters; Eponine Oler; Juan Jovel; Zachary Budinski; Ralph Milford; Vicki W. Lui; Zinat Sayeeda; Robert Mah; William Wei; Hasan Badran; et al. (Nucleic Acids Res., 2023)