Ensemble Approaches for Large-Scale Multi-Label Classification and Question Answering in Biomedicine. - Yannis Papanikolaou; Dimitrios Dimitriadis; Grigorios Tsoumakas; Manos Laliotis; Nikos Markantonatos; Ioannis P. Vlahavas (CLEF (Working Notes), 2014)

AUTH-Atypon at BioASQ 3: Large-Scale Semantic Indexing in Biomedicine. - Yannis Papanikolaou; Grigorios Tsoumakas; Manos Laliotis; Nikos Markantonatos; Ioannis P. Vlahavas (CLEF (Working Notes), 2015)

Large-scale online semantic indexing of biomedical articles via an ensemble of multi-label classification models. - Yannis Papanikolaou; Grigorios Tsoumakas; Manos Laliotis; Nikos Markantonatos; Ioannis P. Vlahavas (J. Biomed. Semant., 2017)

Subset Labeled LDA for Large-Scale Multi-Label Classification. - Yannis Papanikolaou; Grigorios Tsoumakas (CoRR, 2017)

Dense Distributions from Sparse Samples: Improved Gibbs Sampling Parameter Estimators for LDA. - Yannis Papanikolaou; James R. Foulds; Timothy N. Rubin; Grigorios Tsoumakas (J. Mach. Learn. Res., 2017)

Subset Labeled LDA: A Topic Model for Extreme Multi-label Classification. - Yannis Papanikolaou; Grigorios Tsoumakas (DaWaK, 2018)

Hierarchical partitioning of the output space in multi-label data. - Yannis Papanikolaou; Grigorios Tsoumakas; Ioannis Katakis 001 (Data Knowl. Eng., 2018)

Denoising Autoencoder Self-Organizing Map (DASOM). - Christos Ferles; Yannis Papanikolaou; Kevin J. Naidoo (Neural Networks, 2018)

Τεχνικές μηχανικής μάθησης για σημασιολογική δεικτοδότηση κειμένου - Yannis Papanikolaou (2018)

Deep Bidirectional Transformers for Relation Extraction without Supervision. - Yannis Papanikolaou; Ian Roberts; Andrea Pierleoni (DeepLo@EMNLP-IJCNLP, 2019)

Multi-label active learning: key issues and a novel query strategy. - Everton Alvares Cherman; Yannis Papanikolaou; Grigorios Tsoumakas; Maria Carolina Monard (Evol. Syst., 2019)

DARE: Data Augmented Relation Extraction with GPT-2. - Yannis Papanikolaou; Andrea Pierleoni (CoRR, 2020)

Teach me how to Label: Labeling Functions from Natural Language with Text-to-text Transformers. - Yannis Papanikolaou (CoRR, 2021)

Slot Filling for Biomedical Information Extraction. - Yannis Papanikolaou; Francine Bennett (CoRR, 2021)

Deep Self-Organizing Map of Convolutional Layers for Clustering and Visualizing Image Data. - Christos Ferles; Yannis Papanikolaou; Stylianos P. Savaidis; Stelios A. Mitilineos (Mach. Learn. Knowl. Extr., 2021)

Slot Filling for Biomedical Information Extraction. - Yannis Papanikolaou; Marlene Staib; Justin Joshua Grace; Francine Bennett (BioNLP@ACL, 2022)

Neural Embedding Allocation: Distributed Representations of Topic Models. - Kamrun Naher Keya; Yannis Papanikolaou; James R. Foulds (Comput. Linguistics, 2022)

Transcriptomics-based matching of drugs to diseases with deep learning. - Yannis Papanikolaou; Francesco Tuveri; Misa Ogura; Daniel O'Donovan (CoRR, 2023)