OrthoNets: simultaneous visual analysis of orthologs and their interaction neighborhoods across different organisms. - Yanqi Hao; Anna Merkoulovitch; James Vlasblom; Shuye Pu; Andrei L. Turinsky; Denitza Roudeva; Brian Turner; Jack Greenblatt; Shoshana J. Wodak (Bioinform., 2011)

Towards a practical O(n log n) phylogeny algorithm. - Jakub Truszkowski; Yanqi Hao; Daniel G. Brown 001 (Algorithms Mol. Biol., 2012)

Implementing Recommendation Algorithms in a Large-Scale Biomedical Science Knowledge Base. - Jessica Perrie; Yanqi Hao; Zack Hayat; Recep Colak; Kelly A. Lyons; Shankar Vembu; Sam Molyneux (CoRR, 2017)

A qualitative study of large-scale recommendation algorithms for biomedical knowledge bases. - Ehsan Noei; Tsahi Hayat; Jessica Perrie; Recep Colak; Yanqi Hao; Shankar Vembu; Kelly A. Lyons; Sam Molyneux (Int. J. Digit. Libr., 2021)

Communication Analysis for Multidimensional Parallel Training of Large-scale DNN Models. - Zhiquan Lai; Yanqi Hao; Shengwei Li; Dongsheng Li 001 (HPCC/DSS/SmartCity/DependSys, 2023)

Rethinking the Distributed DNN Training Cluster Design from the Cost-effectiveness View. - Zhiquan Lai; Yujie Liu; Wei Wang; Yanqi Hao; Dongsheng Li 001 (HPCC/DSS/SmartCity/DependSys, 2023)

Automated Tensor Model Parallelism with Overlapped Communication for Efficient Foundation Model Training. - Shengwei Li; Zhiquan Lai; Yanqi Hao; Weijie Liu; Keshi Ge; Xiaoge Deng; Dongsheng Li 001; Kai Lu 001 (CoRR, 2023)

HSDP: Accelerating Large-scale Model Training via Efficient Sharded Data Parallelism. - Yanqi Hao; Zhiquan Lai; Wei Wang; Shengwei Li; Weijie Liu; Keshi Ge; Dongsheng Li 001 (ISPA, 2024)

Adversarial Transfer Learning-Based Hybrid Recurrent Network for Air Quality Prediction. - Yanqi Hao; Chuan Luo 001; Tianrui Li 001; Junbo Zhang; Hongmei Chen 001 (Int. J. Intell. Syst., 2025)

Oases: Efficient Large-Scale Model Training on Commodity Servers via Overlapped and Automated Tensor Model Parallelism. - Shengwei Li; Zhiquan Lai; Dongsheng Li 001; Yanqi Hao; Weijie Liu; Keshi Ge; Xiaoge Deng; Kai Lu 001 (IEEE Trans. Parallel Distributed Syst., 2025)