A Modified Quantum-Behaved Particle Swarm Optimization. - Jun Sun 008; Choi-Hong Lai; Wenbo Xu 001; Yanrui Ding; ZhiLei Chai (International Conference on Computational Science (1), 2007)

Clustering of Gene Expression Data with Quantum-Behaved Particle Swarm Optimization. - Wei Chen; Jun Sun 008; Yanrui Ding; Wei Fang 001; Wenbo Xu 001 (IEA/AIE, 2008)

Multiple Sequence Alignment by Improved Hidden Markov Model Training and Quantum-Behaved Particle Swarm Optimization. - Chengyuan Li; Haixia Long; Yanrui Ding; Jun Sun 008; Wenbo Xu 001 (LSMS/ICSEE, 2010)

Multiple sequence alignment using the Hidden Markov Model trained by an improved quantum-behaved particle swarm optimization. - Jun Sun 008; Xiaojun Wu 001; Wei Fang 001; Yanrui Ding; Haixia Long; Wenbo Xu 001 (Inf. Sci., 2012)

T-DYNMOGA-Qw: Detecting Community From Dynamic Residue Interaction Energy Network and Its Application in Analyzing Lipase Thermostability. - Jingsi Ji; Yanrui Ding (IEEE Access, 2020)

The m6A RNA methylation regulators related transcriptome for identification of pancreatic cancer subtypes and prognostic markers. - Zhengshu Lu; Yanrui Ding (ACAI, 2021)

Identification of subtype specific biomarkers of clear cell renal cell carcinoma using random forest and greedy algorithm. - Yanyan Wu; Weishan Han; Deling Xu; Xiaxia Wang 003; Jing Yang; Zhengshu Lu; Xu Chen; Yanrui Ding (Biosyst., 2021)

Probing the Relation Between Community Evolution in Dynamic Residue Interaction Networks and Xylanase Thermostability. - Chen Zhang; Yanrui Ding (IEEE ACM Trans. Comput. Biol. Bioinform., 2021)

Human skeleton representation for 3D action recognition based on complex network coding and LSTM. - Xiangpei Shen; Yanrui Ding (J. Vis. Commun. Image Represent., 2022)

GCNA-Cluster: A Gene Co-Expression Network Alignment to Cluster Cancer Patients Algorithm for Identifying Subtypes of Pancreatic Ductal Adenocarcinoma. - Jing Yang; Zhengshu Lu; Xu Chen; Deling Xu; Dewu Ding; Yanrui Ding (IEEE ACM Trans. Comput. Biol. Bioinform., 2023)

FAUC-S: Deep AUC maximization by focusing on hard samples. - Shoukun Xu; Yanrui Ding; Yanhao Wang; Junru Luo (Neurocomputing, 2024)

DeepPPThermo: A Deep Learning Framework for Predicting Protein Thermostability Combining Protein-Level and Amino Acid-Level Features. - Xiaoyang Xiang; Jiaxuan Gao; Yanrui Ding (J. Comput. Biol., 2024)

Identifying Diagnostic Biomarkers for Autism Spectrum Disorder From Higher-order Interactions Using the PED Algorithm. - Hao Wang; Yanting Liu; Yanrui Ding (Neuroinformatics, 2024)

RAANMF: An adaptive sequence feature representation method for predictions of protein thermostability, PPI, and drug-target interaction. - Qunfang Yan; Shuyi Pan; Zhixing Cheng; Yanrui Ding (Future Gener. Comput. Syst., 2025)

Prediction of Drug-Target Interactions With High- Quality Negative Samples and a Network-Based Deep Learning Framework. - Zhixing Cheng; Deling Xu; Dewu Ding; Yanrui Ding (IEEE J. Biomed. Health Informatics, 2025)