Analysis for gene networks based on logic relationships. - Shudong Wang; Yan Chen; Qingyun Wang 001; Eryan Li; Yansen Su; Dazhi Meng (J. Syst. Sci. Complex., 2010)

Modeling Logic Gene Networks by Means of Probabilistic Dynamic P Systems. - Luis Valencia-Cabrera; Manuel García-Quismondo; Mario de J. Pérez-Jiménez; Yansen Su; Hui Yu; Linqiang Pan (Int. J. Unconv. Comput., 2013)

Continuous Motion Planning in Complex and Dynamic underwater Environments. - Hui Yu; Anwen Shen; Yansen Su (Int. J. Robotics Autom., 2015)

Detecting coordinated regulations of pathways by higher logic analysis. - Yansen Su; Xingyi Zhang 001; Linqiang Pan (BIBM, 2016)

Spiking Neural P Systems with Rules on Synapses Working in Sum Spikes Consumption Strategy. - Yansen Su; Tingfang Wu; Fei Xu; Andrei Paun (Fundam. Informaticae, 2017)

A region division based diversity maintaining approach for many-objective optimization. - Linqiang Pan; Cheng He 001; Ye Tian 009; Yansen Su; Xingyi Zhang 001 (Integr. Comput. Aided Eng., 2017)

A Fast Overlapping Community Detection Algorithm Based on Weak Cliques for Large-Scale Networks. - Xingyi Zhang 001; Congtao Wang; Yansen Su; Linqiang Pan; Hai-Feng Zhang 003 (IEEE Trans. Comput. Soc. Syst., 2017)

A Mixed Representation-Based Multiobjective Evolutionary Algorithm for Overlapping Community Detection. - Lei Zhang 060; Hebin Pan; Yansen Su; Xingyi Zhang 001; Yunyun Niu (IEEE Trans. Cybern., 2017)

A local information based multi-objective evolutionary algorithm for community detection in complex networks. - Fan Cheng 001; Tingting Cui; Yansen Su; Yunyun Niu; Xingyi Zhang 001 (Appl. Soft Comput., 2018)

A multi-objective evolutionary approach for mining frequent and high utility itemsets. - Lei Zhang 060; Guanglong Fu; Fan Cheng 001; Jianfeng Qiu; Yansen Su (Appl. Soft Comput., 2018)

A skin membrane-driven membrane algorithm for many-objective optimization. - Zhangxiao Li; Lei Zhang 060; Yansen Su; Jun Li 048; Xun Wang 010 (Neural Comput. Appl., 2018)

Spiking neural P systems with rules on synapses and anti-spikes. - Tingfang Wu; Yanfeng Wang; Suxia Jiang; Yansen Su; Xiaolong Shi (Theor. Comput. Sci., 2018)

The computational power of enzymatic numerical P systems working in the sequential mode. - Zhiqiang Zhang 002; Yansen Su; Linqiang Pan (Theor. Comput. Sci., 2018)

Identifying Disease Modules Based on Connectivity and Semantic Similarities. - Yansen Su; Huole Zhu; Lei Zhang 060; Xingyi Zhang 001 (BIC-TA (2), 2019)

An improved universal spiking neural P system with generalized use of rules. - Yun Jiang; Yansen Su; Fen Luo (J. Membr. Comput., 2019)

A uniform solution to SAT problem by symport/antiport P systems with channel states and membrane division. - Suxia Jiang; Yanfeng Wang; Yansen Su (Soft Comput., 2019)

A Strengthened Dominance Relation Considering Convergence and Diversity for Evolutionary Many-Objective Optimization. - Ye Tian 009; Ran Cheng; Xingyi Zhang 001; Yansen Su; Yaochu Jin (IEEE Trans. Evol. Comput., 2019)

A non-revisiting genetic algorithm based on a novel binary space partition tree. - Yansen Su; Neng Guo; Ye Tian 009; Xingyi Zhang 001 (Inf. Sci., 2020)

Community detection in complex networks with an ambiguous structure using central node based link prediction. - Hao Jiang 023; Zhenjie Liu; Chunlong Liu; Yansen Su; Xingyi Zhang 001 (Knowl. Based Syst., 2020)

A many-objective evolutionary algorithm with diversity-first based environmental selection. - Chao Wang 039; Huimin Pan; Yansen Su (Swarm Evol. Comput., 2020)

Drug repositioning based on the heterogeneous information fusion graph convolutional network. - Lijun Cai; Changcheng Lu; Junlin Xu; Yajie Meng; Peng Wang 035; Xiangzheng Fu; Xiangxiang Zeng; Yansen Su (Briefings Bioinform., 2021)

Resource allocation and trust computing for blockchain-enabled edge computing system. - Lejun Zhang; Yanfei Zou; Weizheng Wang 001; Zilong Jin; Yansen Su; Huiling Chen 001 (Comput. Secur., 2021)

Secure and efficient data storage and sharing scheme for blockchain-based mobile-edge computing. - Lejun Zhang; Minghui Peng; Weizheng Wang 001; Zilong Jin; Yansen Su; Huiling Chen 001 (Trans. Emerg. Telecommun. Technol., 2021)

An approach of covert communication based on the Ethereum whisper protocol in blockchain. - Lejun Zhang; Zhijie Zhang; Zilong Jin; Yansen Su; Zhuzhu Wang (Int. J. Intell. Syst., 2021)

A parallel multi-objective evolutionary algorithm for community detection in large-scale complex networks. - Yansen Su; Kefei Zhou; Xingyi Zhang 001; Ran Cheng; Chunhou Zheng 001 (Inf. Sci., 2021)

SCMFMDA: Predicting microRNA-disease associations based on similarity constrained matrix factorization. - Lei Li; Zhen Gao; Yu-Tian Wang; Ming-Wen Zhang; Jian-Cheng Ni 001; Chun-Hou Zheng 001; Yansen Su (PLoS Comput. Biol., 2021)

GCAEMDA: Predicting miRNA-disease associations via graph convolutional autoencoder. - Lei Li; Yu-Tian Wang; Cunmei Ji; Chun-Hou Zheng 001; Jian-Cheng Ni 001; Yan-Sen Su (PLoS Comput. Biol., 2021)

EMODMI: A Multi-Objective Optimization Based Method to Identify Disease Modules. - Ye Tian 009; Xiaochun Su; Yansen Su; Xingyi Zhang 001 (IEEE Trans. Emerg. Top. Comput. Intell., 2021)

A Community Structure Enhancement-Based Community Detection Algorithm for Complex Networks. - Yansen Su; Chunlong Liu; Yunyun Niu; Fan Cheng 001; Xingyi Zhang 001 (IEEE Trans. Syst. Man Cybern. Syst., 2021)

Deep learning in retrosynthesis planning: datasets, models and tools. - Jingxin Dong 002; Mingyi Zhao; Yuansheng Liu; Yansen Su; Xiangxiang Zeng (Briefings Bioinform., 2022)

Deep learning joint models for extracting entities and relations in biomedical: a survey and comparison. - Yansen Su; Minglu Wang; Pengpeng Wang; Chunhou Zheng 001; Yuansheng Liu; Xiangxiang Zeng (Briefings Bioinform., 2022)

scHFC: a hybrid fuzzy clustering method for single-cell RNA-seq data optimized by natural computation. - Jing Wang 057; Junfeng Xia; Dayu Tan; Rongxin Lin; Yansen Su; Chun-Hou Zheng 001 (Briefings Bioinform., 2022)

scCNC: a method based on capsule network for clustering scRNA-seq data. - Hai-Yun Wang; Jian-Ping Zhao 001; Chun-Hou Zheng 001; Yan-Sen Su (Bioinform., 2022)

Comparing the Performance of Evolutionary Algorithms for Sparse Multi-Objective Optimization via a Comprehensive Indicator [Research Frontier]. - Yansen Su; Zhongxiang Jin; Ye Tian 009; Xingyi Zhang 001; Kay Chen Tan (IEEE Comput. Intell. Mag., 2022)

Smart contract vulnerability detection combined with multi-objective detection. - Lejun Zhang; Jinlong Wang; Weizheng Wang 001; Zilong Jin; Yansen Su; Huiling Chen 001 (Comput. Networks, 2022)

Molecule optimization via multi-objective evolutionary in implicit chemical space. - Xin Xia; Yansen Su; Chunhou Zheng 001; Xiangxiang Zeng (CoRR, 2022)

Learning user sentiment orientation in social networks for sentiment analysis. - Jie Chen 025; Nan Song; Yansen Su; Shu Zhao; Yanping Zhang 001 (Inf. Sci., 2022)

BDSS: Blockchain-based Data Sharing Scheme With Fine-grained Access Control And Permission Revocation In Medical Environment. - Lejun Zhang; Yanfei Zou; Muhammad Hassam Yousuf; Weizheng Wang 001; Zilong Jin; Yansen Su; Seokhoon Kim (KSII Trans. Internet Inf. Syst., 2022)

Research on a Covert Communication Model Realized by Using Smart Contracts in Blockchain Environment. - Lejun Zhang; Zhijie Zhang; Weizheng Wang 001; Zilong Jin; Yansen Su; Huiling Chen 001 (IEEE Syst. J., 2022)

A Robust Algorithm Based on Link Label Propagation for Identifying Functional Modules From Protein-Protein Interaction Networks. - Hao Jiang 023; Fei Zhan; Congtao Wang; Jianfeng Qiu; Yansen Su; Chunhou Zheng 001; Xingyi Zhang 001; Xiangxiang Zeng (IEEE ACM Trans. Comput. Biol. Bioinform., 2022)

scCDG: A Method Based on DAE and GCN for scRNA-Seq Data Analysis. - Hai-Yun Wang; Jian-ping Zhao 001; Yan-Sen Su; Chun-Hou Zheng 001 (IEEE ACM Trans. Comput. Biol. Bioinform., 2022)

Extra Trees Method for Predicting LncRNA-Disease Association Based On Multi-Layer Graph Embedding Aggregation. - Qing-Wen Wu; Rui-Fen Cao; Jun-Feng Xia; Jian-Cheng Ni 001; Chunhou Zheng 001; Yan-Sen Su (IEEE ACM Trans. Comput. Biol. Bioinform., 2022)

Balancing Objective Optimization and Constraint Satisfaction in Constrained Evolutionary Multiobjective Optimization. - Ye Tian 009; Yajie Zhang; Yansen Su; Xingyi Zhang 001; Kay Chen Tan; Yaochu Jin (IEEE Trans. Cybern., 2022)

scDSSC: Deep Sparse Subspace Clustering for scRNA-seq Data. - Haiyun Wang; Jianping Zhao 001; Chunhou Zheng 001; Yansen Su (PLoS Comput. Biol., 2022)

scAEQN: A Batch Correction Joint Dimension Reduction Method on scRNA-seq Data. - Sining Song; Demin Liu; Haiyun Wang; Jianping Zhao 001; Chunhou Zheng 001; Yansen Su (BIC, 2023)

BIJE: A Joint Extraction Model for Biomedical Information Extraction. - Yansen Su; Pengpeng Wang; Shuna Cui; Fei Xu; Tseren-Onolt Ishdorj (ICIC (3), 2023)

Extraction of Relationship Between Esophageal Cancer and Biomolecules Based on BioBERT. - Dayu Tan; Yang Yang; Minglu Wang; Pengpeng Wang; Lejun Zhang; Tseren-Onolt Ishdorj; Yansen Su (ICIC (3), 2023)

Prediction of Cancer Driver Genes Based on Pyramidal Dynamic Mapping Algorithm. - Pi-Jing Wei; Shu-Li Zhou; Rui-Fen Cao; Yansen Su; Chun-Hou Zheng 001 (ICIC (3), 2023)

scDCCA: deep contrastive clustering for single-cell RNA-seq data based on auto-encoder network. - Jing Wang 057; Junfeng Xia; Haiyun Wang; Yansen Su; Chun-Hou Zheng 001 (Briefings Bioinform., 2023)

scGMAAE: Gaussian mixture adversarial autoencoders for diversification analysis of scRNA-seq data. - Hai-Yun Wang; Jian-Ping Zhao 001; Chun-Hou Zheng 001; Yan-Sen Su (Briefings Bioinform., 2023)

Denoising adaptive deep clustering with self-attention mechanism on single-cell sequencing data. - Yansen Su; Rongxin Lin; Jing Wang 057; Dayu Tan; Chun-Hou Zheng 001 (Briefings Bioinform., 2023)

Evolutionary Multi-Objective Optimization in Searching for Various Antimicrobial Peptides [Feature]. - Yiping Liu; Xinyi Zhang; Yuansheng Liu; Yansen Su; Xiangxiang Zeng; Gary G. Yen (IEEE Comput. Intell. Mag., 2023)

Accelerating Two-Phase Multiobjective Evolutionary Algorithm for Electric Location-Routing Problems. - Chao Wang 039; Rongrong Liu; Yansen Su; Xingyi Zhang 001 (IEEE Trans. Intell. Transp. Syst., 2023)

An Entity Alignment Model for Echinococcosis Knowledge Graph. - Yuan Gao; Lejun Zhang; Fei Xu; Tseren-Onolt Ishdorj; Yansen Su (ICIC (LNAI 6), 2024)

A Retrieval-Based Molecular Style Transformation Optimization Model. - Cheng Wang; Ya-Jie Zhang; Xin Xia; Yan-Sen Su; Chun-Hou Zheng 001; Qing-Wen Wu (ICIC (LNBI 1), 2024)

DeepFGRN: inference of gene regulatory network with regulation type based on directed graph embedding. - Zhen Gao; Yansen Su; Junfeng Xia; Rui-Fen Cao; Yun Ding; Chun-Hou Zheng 001; Pi-Jing Wei (Briefings Bioinform., 2024)

AMGDTI: drug-target interaction prediction based on adaptive meta-graph learning in heterogeneous network. - Yansen Su; Zhiyang Hu; Fei Wang 095; Yannan Bin; Chun-Hou Zheng 001; Haitao Li 004; Haowen Chen; Xiangxiang Zeng (Briefings Bioinform., 2024)

scAMAC: self-supervised clustering of scRNA-seq data based on adaptive multi-scale autoencoder. - Dayu Tan; Cheng Yang; Jing Wang 057; Yansen Su; Chunhou Zheng 001 (Briefings Bioinform., 2024)

Inference of gene regulatory networks based on directed graph convolutional networks. - Pi-Jing Wei; Ziqiang Guo; Zhen Gao; Zheng Ding; Rui-Fen Cao; Yansen Su; Chun-Hou Zheng 001 (Briefings Bioinform., 2024)

MHCLSyn: Multi-View Hypergraph Contrastive Learning for Synergistic Drug Combination Prediction. - Lei Li; Guodong Lü; Chun-Hou Zheng 001; Renyong Lin; Yansen Su (Big Data Min. Anal., 2024)

MEFFGRN: Matrix enhancement and feature fusion-based method for reconstructing the gene regulatory network of epithelioma papulosum cyprini cells by spring viremia of carp virus infection. - Pi-Jing Wei; Jin-Jin Bao; Zhen Gao; Jing-Yun Tan; Rui-Fen Cao; Yansen Su; Chun-Hou Zheng 001; Li Deng (Comput. Biol. Medicine, 2024)

Balancing property optimization and constraint satisfaction for constrained multi-property molecular optimization. - Xin Xia; Ya-Jie Zhang; Xiangxiang Zeng; Xingyi Zhang 001; Chun-Hou Zheng 001; Yansen Su (CoRR, 2024)

Multi-scale Cascaded Large-Model for Whole-body ROI Segmentation. - Rui Hao; Dayu Tan; Yansen Su; Chun-Hou Zheng 001 (CoRR, 2024)

Evolutionary Multiobjective Molecule Optimization in an Implicit Chemical Space. - Xin Xia; Yiping Liu; Chunhou Zheng 001; Xingyi Zhang 001; Qingwen Wu; Xin Gao 001; Xiangxiang Zeng; Yansen Su (J. Chem. Inf. Model., 2024)

Multi-Level Medical Image Segmentation Network Based on Multi-Scale and Context Information Fusion Strategy. - Dayu Tan; Zhiyuan Yao; Xin Peng 003; Haiping Ma; Yike Dai; Yansen Su; Weimin Zhong (IEEE Trans. Emerg. Top. Comput. Intell., 2024)

Large-Scale Data-Driven Optimization in Deep Modeling With an Intelligent Decision-Making Mechanism. - Dayu Tan; Yansen Su; Xin Peng 003; Hongtian Chen; Chunhou Zheng 001; Xingyi Zhang 001; Weimin Zhong (IEEE Trans. Cybern., 2024)

A Novel Skip-Connection Strategy by Fusing Spatial and Channel Wise Features for Multi-Region Medical Image Segmentation. - Dayu Tan; Rui Hao; Xiaoping Zhou; Junfeng Xia; Yansen Su; Chun-Hou Zheng 001 (IEEE J. Biomed. Health Informatics, 2024)

MDNNSyn: A Multi-Modal Deep Learning Framework for Drug Synergy Prediction. - Lei Li; Haitao Li 004; Tseren-Onolt Ishdorj; Chun-Hou Zheng 001; Yansen Su (IEEE J. Biomed. Health Informatics, 2024)

An Effective Semantic Segmentation Network With Multipath Attention for Industrial Meter Pointer Images. - Dayu Tan; Jinlong Wang; Yansen Su; Zhijun Zhang 006; Xin Peng 003; Chun-Hou Zheng 001; Weimin Zhong (IEEE Trans. Ind. Informatics, 2024)

SR-Net: High-Precision Hippocampal Segmentation and Radiomics-Based Pipeline for Alzheimer's Disease Diagnosis and Prediction. - Yifei Chen; Wenzheng Zhao; Yukang Wang; Zhen Wang; Yansen Su; Haitao Li 004 (ICIC (25), 2025)

DCA-Enhancer: A Dual-Scale Convolutional Attention Network for Accurate Enhancer Identification and Strength Prediction. - Haitao Li 004; Yue Jia; Li Dong; Yansen Su; Chunhou Zheng 001 (ICIC (25), 2025)

PISynergy: A Triplet Interaction and Causal Interpretation Framework for Drug Synergy Prediction. - Haitao Li 004; Long Zheng; Yiwei Chen; Junjie Li; Chun-Hou Zheng 001; Junjie Wang; Yansen Su (ICIC (27), 2025)

A Latent Diffusion Model for Molecular Optimization. - Dayu Tan; Pengyuan Xu; Xin Xia; Yajie Zhang; Chun-Hou Zheng 001; Yansen Su (ICIC (28), 2025)

An Adaptive Multi-view Feature Fusion Framework Based on Multiple Graphs for Predicting Drug-Drug Interactions. - Fei Wang 095; Zefan Cheng; Xiujuan Lei; Fang-Xiang Wu; Chun-Hou Zheng 001; Yansen Su (ICIC (26), 2025)

AttentionGRN: a functional and directed graph transformer for gene regulatory network reconstruction from scRNA-seq data. - Zhen Gao; Yansen Su; Jin Tang 001; Huaiwan Jin; Yun Ding; Rui-Fen Cao; Pi-Jing Wei; Chun-Hou Zheng 001 (Briefings Bioinform., 2025)

AEPMA: peptide-microbe association prediction based on autoevolutionary heterogeneous graph learning. - Zhiyang Hu; Linqiang Pan; Daijun Zhang; Yannan Bin; Yansen Su (Briefings Bioinform., 2025)

Multi-view clustering for single-cell RNA-seq data based on graph fusion. - Jing Wang 057; Junfeng Xia; Dayu Tan; Yunjie Ma; Yansen Su; Chun-Hou Zheng 001 (Briefings Bioinform., 2025)

GAEDGRN: reconstruction of gene regulatory networks based on gravity-inspired graph autoencoders. - Pi-Jing Wei; Huaiwan Jin; Zhen Gao; Yansen Su; Chun-Hou Zheng 001 (Briefings Bioinform., 2025)

CMOMO: a deep multi-objective optimization framework for constrained molecular multi-property optimization. - Xin Xia; Yajie Zhang; Xiangxiang Zeng; Xing-yi Zhang 001; Chun-Hou Zheng 001; Yansen Su (Briefings Bioinform., 2025)

An efficient and lightweight adaptive network for three-dimensional medical image segmentation. - Dayu Tan; Manman Shi; Yansen Su; Xin Peng 003; Chunhou Zheng 001; Kaixun He; Weimin Zhong (Eng. Appl. Artif. Intell., 2025)

Performer: A High-Performance Global-Local Model-Augmented With Dual Network Interaction Mechanism. - Dayu Tan; Linfeng Hua; Rui Hao; Qi Xu; Yansen Su; Chunhou Zheng 001; Weimin Zhong (IEEE Trans. Cogn. Dev. Syst., 2025)

Drug combination prediction for parasitic diseases through information-augmented hypergraph neural network. - Lei Li; Hongyu Zhang; Meng Mi; Haitao Li 004; Guodong Lü; Chun-Hou Zheng 001; Yansen Su (Future Gener. Comput. Syst., 2026)