Improved pairwise alignment of proteins in the Twilight Zone using local structure predictions. - Yao-ming Huang; Christopher Bystroff (CSB Workshops, 2005)

Improved pairwise alignments of proteins in the Twilight Zone using local structure predictions. - Yao-ming Huang; Christopher Bystroff (Bioinform., 2006)

Exploring objective functions and cross-terms in the optimization of an energy function for protein design. - Yao-ming Huang; Christopher Bystroff (BCB, 2012)

Expanded Explorations into the Optimization of an Energy Function for Protein Design. - Yao-ming Huang; Chris Bystroff (IEEE ACM Trans. Comput. Biol. Bioinform., 2013)

Improving computational efficiency and tractability of protein design using a piecemeal approach. A strategy for parallel and distributed protein design. - Derek J. Pitman; Christian D. Schenkelberg; Yao-ming Huang; Frank D. Teets; Daniel J. DiTursi; Christopher Bystroff (Bioinform., 2014)