PheWAS Network Analysis and Visualization. - Yaomin Xu; Todd L. Edwards; Lisa Bastarache; Rebecca N. Jerome; Shilin Zho; Eric Torstenson; Wei-Qi Wei; Jana Shirey-Rice; Erica A. Bowton; Yu Shyr; Jill M. Pulley; Joshua C. Denny (AMIA, 2015)

Snowball: resampling combined with distance-based regression to discover transcriptional consequences of a driver mutation. - Yaomin Xu; Xingyi Guo; Jiayang Sun; Zhongming Zhao (Bioinform., 2015)

PheWAS-ME: a web-app for interactive exploration of multimorbidity patterns in PheWAS. - Nick Strayer; Jana K. Shirey-Rice; Yu Shyr; Joshua C. Denny; Jill M. Pulley; Yaomin Xu (Bioinform., 2021)

Interactive network-based clustering and investigation of multimorbidity association matrices with associationSubgraphs. - Nick Strayer; Siwei Zhang; Lydia Yao; Tess Vessels; Cosmin Adrian Bejan; Ryan S. Hsi; Jana K. Shirey-Rice; Justin M. Balko; Douglas B. Johnson; Elizabeth J. Phillips; Alex Bick; Todd L. Edwards; et al. (Bioinform., 2023)

PheMIME: an interactive web app and knowledge base for phenome-wide, multi-institutional multimorbidity analysis. - Siwei Zhang; Nick Strayer; Tess Vessels; Karmel Choi; Geoffrey W. Wang; Yajing Li; Cosmin Adrian Bejan; Ryan S. Hsi; Alex Bick; Digna R. Velez Edwards; Michael R. Savona; Elizabeth J. Phillips; et al. (J. Am. Medical Informatics Assoc., 2024)