Representing Qualitative Spatial Information in OWL-DL. - Yarden Katz; Bernardo Cuenca Grau (OWLED, 2005)

Towards a Nonmonotonic Extension to OWL. - Yarden Katz; Bijan Parsia (OWLED, 2005)

Representing Web Service Policies in OWL-DL. - Vladimir Kolovski; Bijan Parsia; Yarden Katz; James A. Hendler (ISWC, 2005)

Social Network-based Trust in Prioritized Default Logic. - Yarden Katz; Jennifer Golbeck (AAAI, 2006)

Belief Base Revision for Expressive Description Logics. - Christian Halaschek-Wiener; Yarden Katz (OWLED, 2006)

Implementing OWL Defaults. - Vladimir Kolovski; Bijan Parsia; Yarden Katz (OWLED, 2006)

Pellet: A practical OWL-DL reasoner. - Evren Sirin; Bijan Parsia; Bernardo Cuenca Grau; Aditya Kalyanpur; Yarden Katz (J. Web Semant., 2007)

Quantitative visualization of alternative exon expression from RNA-seq data. - Yarden Katz; Eric T. Wang; Jacob Silterra; Schraga Schwartz; Bang Wong; Helga Thorvaldsdóttir; James T. Robinson; Jill P. Mesirov; Edoardo M. Airoldi; Christopher B. Burge (Bioinform., 2015)

A single-cell survey of the small intestinal epithelium. - Adam L. Haber; Moshe Biton; Noga Rogel; Rebecca H. Herbst; Karthik Shekhar; Christopher Smillie; Grace Burgin; Toni M. Delorey; Michael R. Howitt; Yarden Katz; Itay Tirosh; Semir Beyaz; et al. (Nat., 2017)

Probabilistic Inference with Polymerizing Biochemical Circuits. - Yarden Katz; Walter Fontana (Entropy, 2022)