SOP-GPU: influence of solvent-induced hydrodynamic interactions on dynamic structural transitions in protein assemblies. - Andrey Alekseenko; Olga Kononova; Yaroslav Kholodov; Kenneth A. Marx; Valeri Barsegov (J. Comput. Chem., 2016)

Fluctuating Nonlinear Spring Model of Mechanical Deformation of Biological Particles. - Olga Kononova; Joost Snijder; Yaroslav Kholodov; Kenneth A. Marx; Gijs J. L. Wuite; Wouter H. Roos; Valeri Barsegov (PLoS Comput. Biol., 2016)

Bayesian Localization for Autonomous Vehicle using Sensor Fusion and Traffic Signs. - Sergey Verentsov; Emil Magerramov; Vlad Vinogradov; Ramil Gizatullin; Andrey Alekseenko; Yaroslav Kholodov; Evgeniy Nikolskiy (ICRAI, 2017)

Adaptive traffic light control on highway entrances. - Andrey Alekseenko; Yaroslav Kholodov; Aleksander Kholodov; Yuri V. Chekhovich; Vsevolod Starozhilets (ITSC, 2017)

Bayesian Framework for Vehicle Localization Using Crowdsourced Data. - Sergey Verentsov; Emil Magerramov; Vlad Vinogradov; Ramil Gizatullin; Andrey Alekseenko; Yaroslav Kholodov; Evgeniy Nikolskiy (Intelligent Vehicles Symposium, 2018)

Deep Embeddings for Brand Detection in Product Titles. - Andrey Kulagin; Yuriy Gavrilin; Yaroslav Kholodov (AIST, 2019)

Monte Carlo on the manifold and MD refinement for binding pose prediction of protein-ligand complexes: 2017 D3R Grand Challenge. - Mikhail Ignatov; Cong Liu 031; Andrey Alekseenko; Zhuyezi Sun; Dzmitry Padhorny; Sergei Kotelnikov; Andrey M. Kazennov; Ivan Grebenkin; Yaroslav Kholodov; Istvan Kolosvari; Alberto Pérez; Ken A. Dill; et al. (J. Comput. Aided Mol. Des., 2019)

Activations and Gradients Compression for Model-Parallel Training. - Mikhail Rudakov; Aleksandr Beznosikov; Yaroslav Kholodov; Alexander V. Gasnikov (CoRR, 2024)

Local Methods with Adaptivity via Scaling. - Saveliy Chezhegov; Sergey Skorik; Nikolas Khachaturov; Danil Shalagin; Aram Avetisyan; Aleksandr Beznosikov; Martin Takác 001; Yaroslav Kholodov; Alexander V. Gasnikov (CoRR, 2024)

AI Agents Meet Blockchain: A Survey on Secure and Scalable Collaboration for Multi-Agents. - Md. Monjurul Karim; Dong Hoang Van; Sangeen Khan; Qiang Qu; Yaroslav Kholodov (Future Internet, 2025)

Adaptive Backdoor Attacks With Reasonable Constraints on Graph Neural Networks. - Xuewen Dong; Jiachen Li; Shujun Li; Zhichao You; Qiang Qu; Yaroslav Kholodov; Yulong Shen 001 (IEEE Trans. Dependable Secur. Comput., 2025)