RNAJunction: a database of RNA junctions and kissing loops for three-dimensional structural analysis and nanodesign. - Eckart Bindewald; Robert Hayes; Yaroslava G. Yingling; Wojciech Kasprzak; Bruce A. Shapiro (Nucleic Acids Res., 2008)

X3DBio1: a visual analysis tool for biomolecular structure exploration. - Hong Yi; Abhishek Singh 004; Yaroslava G. Yingling (Visualization and Data Analysis, 2012)

X3DBio2: A visual analysis tool for biomolecular structure comparison. - Hong Yi; Sidharth Thakur; Latsavongsakda Sethaphong; Yaroslava G. Yingling (Visualization and Data Analysis, 2013)

Uncertainty Quantification and Sensitivity Analysis of Partial Charges on Macroscopic Solvent Properties in Molecular Dynamics Simulations with a Machine Learning Model. - James S. Peerless; Albert L. Kwansa; Branden S. Hawkins; Ralph C. Smith; Yaroslava G. Yingling (J. Chem. Inf. Model., 2021)

BUILD-KG: Integrating Heterogeneous Data Into Analytics-Enabling Knowledge Graphs. - Kara Schatz; Pei-Yu Hou; Alexey V. Gulyuk; Yaroslava G. Yingling; Rada Chirkova (IEEE Big Data, 2023)

Provenance-Aware Data Integration and Summarization Querying for Knowledge Graphs. - Pei-Yu Hou; Jing Ao; Kara Schatz; Alexey V. Gulyuk; Yaroslava G. Yingling; Rada Chirkova (iiWAS, 2023)

INTEGRATE-KG: A Workflow For Unifying Heterogeneous Data Driven by Shared Languages. - Nahed Abu Zaid; Kara Schatz; Kimberly Bourne; Darrell Harry; Christine Hendren; Anna-Maria Marshall; Khara Grieger; Jacob Jones; Alexey V. Gulyuk; Yaroslava G. Yingling; Rada Chirkova (IEEE Big Data, 2024)