Optimization of morphological data in numerical taxonomy analysis using genetic algorithms feature selection method. - Yasin Bakis; Osman Ugur Sezerman; M. Tekin Babaç; Cem Meydan (GECCO (Companion), 2009)

An entropy based heuristic model for predicting functional sub-type divisions of protein families. - Deniz Yörükoglu; Yasin Bakis; Osman Ugur Sezerman (GECCO (Companion), 2009)

Testing robustness of relative complexity measure method constructing robust phylogenetic trees for Galanthus L. Using the relative complexity measure. - Yasin Bakis; Hasan H. Otu; Nivart Taçi; Cem Meydan; Nee Bilgin; Sirri Yüzbaiolu; Osman Ugur Sezerman (BMC Bioinform., 2013)

Biodiversity Image Quality Metadata Augments Convolutional Neural Network Classification of Fish Species. - Jeremy Leipzig; Yasin Bakis; Xiaojun Wang; Mohannad Elhamod; Kelly Diamond; Wasila M. Dahdul; Anuj Karpatne; A. Murat Maga; Paula M. Mabee; Henry L. Bart Jr.; Jane Greenberg (MTSR, 2020)

Automatic Metadata Generation for Fish Specimen Image Collections. - Joel Pepper; Jane Greenberg; Yasin Bakis; Xiaojun Wang; Henry L. Bart Jr.; David E. Breen (JCDL, 2021)

Toward a Flexible Metadata Pipeline for Fish Specimen Images. - Dom Jebbia; Xiaojun Wang; Yasin Bakis; Henry L. Bart Jr.; Jane Greenberg (MTSR, 2022)

Discovering Novel Biological Traits From Images Using Phylogeny-Guided Neural Networks. - Mohannad Elhamod; Mridul Khurana; Harish Babu Manogaran; Josef C. Uyeda; Meghan A. Balk; Wasila M. Dahdul; Yasin Bakis; Henry L. Bart Jr.; Paula M. Mabee; Hilmar Lapp; James P. Balhoff; Caleb Charpentier; et al. (KDD, 2023)

Hierarchical Conditioning of Diffusion Models Using Tree-of-Life for Studying Species Evolution. - Mridul Khurana; Arka Daw; M. Maruf; Josef C. Uyeda; Wasila M. Dahdul; Caleb Charpentier; Yasin Bakis; Henry L. Bart Jr.; Paula M. Mabee; Hilmar Lapp; James P. Balhoff; Wei-Lun Chao; et al. (ECCV (89), 2024)

VLM4Bio: A Benchmark Dataset to Evaluate Pretrained Vision-Language Models for Trait Discovery from Biological Images. - M. Maruf; Arka Daw; Kazi Sajeed Mehrab; Harish Babu Manogaran; Abhilash Neog; Medha Sawhney; Mridul Khurana; James P. Balhoff; Yasin Bakis; Bahadir Altintas; Matthew J. Thompson; Elizabeth G. Campolongo; et al. (NeurIPS, 2024)

Fish-Vista: A Multi-Purpose Dataset for Understanding & Identification of Traits from Images. - Kazi Sajeed Mehrab; M. Maruf; Arka Daw; Harish Babu Manogaran; Abhilash Neog; Mridul Khurana; Bahadir Altintas; Yasin Bakis; Elizabeth G. Campolongo; Matthew J. Thompson; Xiaojun Wang; Hilmar Lapp; et al. (CoRR, 2024)

Computational metadata generation methods for biological specimen image collections. - Kevin Karnani; Joel Pepper; Yasin Bakis; Xiaojun Wang; Henry L. Bart Jr.; David E. Breen; Jane Greenberg (Int. J. Digit. Libr., 2024)

Fish-Vista: A Multi-Purpose Dataset for Understanding & Identification of Traits from Images. - Kazi Sajeed Mehrab; M. Maruf; Arka Daw; Abhilash Neog; Harish Babu Manogaran; Mridul Khurana; Zhenyang Feng; Bahadir Altintas; Yasin Bakis; Elizabeth G. Campolongo; Matthew J. Thompson; Xiaojun Wang; et al. (CVPR, 2025)