Joint estimation of DNA copy number from multiple platforms. - Nancy Ruonan Zhang; Yasin Senbabaoglu; Jun Z. Li (Bioinform., 2010)

OKVAR-Boost: a novel boosting algorithm to infer nonlinear dynamics and interactions in gene regulatory networks. - Néhémy Lim; Yasin Senbabaoglu; George Michailidis; Florence d'Alché-Buc (Bioinform., 2013)

A Multi-Method Approach for Proteomic Network Inference in 11 Human Cancers. - Yasin Senbabaoglu; Selçuk Onur Sümer; Francisco Sánchez-Vega; Debra Bemis; Giovanni Ciriello; Nikolaus Schultz; Chris Sander (PLoS Comput. Biol., 2016)

Benchmarking and Evaluation of AI Models in Biology: Outcomes and Recommendations from the CZI Virtual Cells Workshop. - Elizabeth Fahsbender; Alma Andersson; Jeremy Ash; Polina Binder; Daniel Burkhardt; Benjamin Chang 009; Georg K. Gerber; Anthony Gitter; Patrick Godau; Ankit Gupta; Genevieve Haliburton; Siyu He; et al. (CoRR, 2025)